HsaEX0073750 @ hg38
Exon Skipping
Gene
ENSG00000181444 | ZNF467
Description
zinc finger protein 467 [Source:HGNC Symbol;Acc:HGNC:23154]
Coordinates
chr7:149770999-149773479:-
Coord C1 exon
chr7:149773108-149773479
Coord A exon
chr7:149771385-149771496
Coord C2 exon
chr7:149770999-149771074
Length
112 bp
Sequences
Splice sites
3' ss Seq
GCTGGCTCCTATTTCACCAGCTC
3' ss Score
5.24
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
Exon sequences
Seq C1 exon
GAGCTCCCACTTCCACACCTACTCCAGGCTCGGAGCCTTAGGACCATCACCTGCCCACCTAAGCCCACGGTGCTCCCTCCTGGGACCCCACTCCTGAAACCCCCTGCCCCTGCCTCCCCCAGCCCGGTGCGCCGGGGCTCTCCGCCCGCTCCCTCGGTCCCTCCTCCCTTGCAGGCGCCGTTTCCCGGCTTCGACTCCCCGCGCGTCTATCCCTCTCCTCCCCGCGAAGTTTCGGGGCTGTCAGTCTGTCAGTCTTTCAGGCCGTCAGCACCCGAGCTGCAGGCGGCGAGCGCCATTGTGAGCAGAGCCGGCGGGGCAGGAGGCCCGGGCGCCTGGGTCCCCGCGGCGCGGGCGGAGCGGCCGGCCAGCCAG
Seq A exon
CTCGGGCAGTGACAGCTGGAGGACCTGGGAGATGAAGTTTCCCACTCCCCACCCTGGGCTCCCACCCTCAAGCCTCTCCCCAGAGAATCGAATCTTGCCTGCACTTTCCCAG
Seq C2 exon
GTTCTGTGGCCTGATCCCCAGGAGGAGCTACTCTGGGTTACCATGAGAGAGACCTTGGAGGCCCTCAGCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181444_MULTIEX1-1/5=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTCCCGGCTTCGACTC
R:
GGCCTCCAAGGTCTCTCTCAT
Band lengths:
257-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development