HsaINT1047490 @ hg38
Intron Retention
Gene
ENSG00000181444 | ZNF467
Description
zinc finger protein 467 [Source:HGNC Symbol;Acc:HGNC:23154]
Coordinates
chr7:149770999-149773479:-
Coord C1 exon
chr7:149773108-149773479
Coord A exon
chr7:149771075-149773107
Coord C2 exon
chr7:149770999-149771074
Length
2033 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
AGGCTGTCTTTTCTCCATAGGTT
3' ss Score
10.83
Exon sequences
Seq C1 exon
GAGCTCCCACTTCCACACCTACTCCAGGCTCGGAGCCTTAGGACCATCACCTGCCCACCTAAGCCCACGGTGCTCCCTCCTGGGACCCCACTCCTGAAACCCCCTGCCCCTGCCTCCCCCAGCCCGGTGCGCCGGGGCTCTCCGCCCGCTCCCTCGGTCCCTCCTCCCTTGCAGGCGCCGTTTCCCGGCTTCGACTCCCCGCGCGTCTATCCCTCTCCTCCCCGCGAAGTTTCGGGGCTGTCAGTCTGTCAGTCTTTCAGGCCGTCAGCACCCGAGCTGCAGGCGGCGAGCGCCATTGTGAGCAGAGCCGGCGGGGCAGGAGGCCCGGGCGCCTGGGTCCCCGCGGCGCGGGCGGAGCGGCCGGCCAGCCAG
Seq A exon
GTAAGGGCCGGGGAGGCTCCTCTGCAGGCGGCCCCGCCCGCGTCTCCCTCAGCGCCGCGGTTGGGTCACGGCCGGCTCCGCGCAGGTGACAGCCCCGGGGGTAGGGGCGCGGACGGCGGGCGTGGGGGAGGGGCGCGGGTCCGGGGAGGTCGGGGGCTGGGGGGAAGGGAGGGCAAGGCCGGCGCGGGCAGGGTGAGGGCTGTGGGGGTAGAGGAGACCGGGGGGGCTGGAGGGAAGGGCGGGGGCTGGGAGGGGGTCGGGCGGGAGGCAGGTGGGAAGGGGGACGACGGGCCCCGAGGGGAGGAGAGAGGGAGTGTGGGAGGGGGCCGAGGGGGAAGGGGAGGAAGAAGCGGGCGCTGGGGACCGGGCCACTCGGTAGGGGCGGGAGAGGAGGGCGCTGACAGGTGAGCCCCGGAGCTGGGGAGGGGGCCGGGACCTGGAATGAAGTCGGCGATCGGAGCTGCTTGGGAGGGCGGCGGGGCAGGGAGGTGGAGCTGAGGGTCCCGTCGGGAGGAAAACTTGGGAGGGGTGAGAAGTCCGAGGGGAGCAGAAATAGGGAGGGGGCGCCGCGGCGGAGAAGAGAGGCGCGGAGGGGTGTTCGGAGGGGAGACGGAGTGGGGAGGGCAGGGCCCGCGGGAAGGTCCCGAGAGAGCGGGTCAGCCCTAGACCCCCAGGCTTGGGGGCCGGAGGACCCGGGAGCTGGGAAGCAGCCTGGGAGGGGGGAGGGGAAGAGCGGTTCTGGGGACTGGGGACGGGGAGGGAAGCGAAGCTGGAGCCTGCTGGGGAGACAGAGGGGGAAGGGAGGCGGGGGCCTCGGAGGGGAAGGAGAGCTGCAGAAGGGAGGGGGGAGGGGGAGGGCGGTGGGGAGACGTGGGGGAGGGCTGGAAAGGGGGAGGGGAAGGGAACCGAGGTGAGGCGAGGAAAGGAGAAGGAAGGGAAACCGGGGTGGGGGAGGAGAGGAGGGAGGGGAGAGGAGAACTGGGTTGGGGAAAAGAGCTGAGAGGAGGAGGGCGGGGGTTGGCGAGGAAGGAAAAGAGGAGGGGGAAAGGAAGGGAGAGGGTGTGCAGCCGGGGAGGGAGATGGAGCGGGGGAGAACCGGGAGGGTAGGGAAAGGCAGCCTGGAGTCTGAGAGGGGGAGGGGAGCGCTGCCGCCGAGGCGGCCCGGAGCGTAGGGTCAGGGGAGGCGGTGGCAGCGGAGGGCCGACCCGGACGGGGCCTCGAGGGGTTGGCCCTGCCGGGCTCGGGCGGGCGGAGCCTGAGGGGCGGGGCCGGGGGCGGAGCCGAGGCGCCGGCCCGATTCGCAGGGGAGAGAGGGCGGAAGGCAGAGGGAGCGGGAGGGGCGGGGCAGAGGGAAGGCTGCCGGGGAGATGGGGGAGGGGAGTCTGCTGGGGGAGGGGCGGGGGAGCCGCGGAAGGCGGAGCAGGGAAGGGGCAGCAGGGGCGGTGTCCGGGCCTTGGGCAGCCCGGCACGGGTGAGAGGTGGTTTTGTGGTAGGGGTTTAGGAAGAGGCGATCATTTTCTAGCTACAAGAGGATCCTCTCGAGGACCTCCCCAAGCAGTACCCCTAAAGTGACACTCACTCCCGCCCCTGGGCTGGCTCCTATTTCACCAGCTCGGGCAGTGACAGCTGGAGGACCTGGGAGATGAAGTTTCCCACTCCCCACCCTGGGCTCCCACCCTCAAGCCTCTCCCCAGAGAATCGAATCTTGCCTGCACTTTCCCAGGCAAGGACGCTGGGGCGTGGAGTTGCGGTGCTGATGGGCCGGGGTTGGCGGTGACAGACCTGCCAGGTGAGGGGGTGGCGCGGCTGGTTTCCAGAGCTGACAGAAATCGTTTCAAGGCCTTCTTGGGCCACCTTCAAAGATCTCTTGGCTTGGCTTTCTAAACCCAGTTTCCCAAATTTCCCCCAGCTGTACCTGGGGATGTCACCTTTGGAGCTCCTGGAAGAGCCCATAGGGAGAGGTTGGGCAGAGCCAGGGCCCAGGTGGAAGCTGGCGTGGGAAAAATCTGAACAAGGCTGTCTTTTCTCCATAG
Seq C2 exon
GTTCTGTGGCCTGATCCCCAGGAGGAGCTACTCTGGGTTACCATGAGAGAGACCTTGGAGGCCCTCAGCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181444:ENST00000302017:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains