MmuINT0179318 @ mm10
Intron Retention
Gene
ENSMUSG00000068551 | Zfp467
Description
zinc finger protein 467 [Source:MGI Symbol;Acc:MGI:1916160]
Coordinates
chr6:48443412-48445825:-
Coord C1 exon
chr6:48445353-48445825
Coord A exon
chr6:48443488-48445352
Coord C2 exon
chr6:48443412-48443487
Length
1865 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GAACAGGGCTGTCTTTTTAGGGT
3' ss Score
5.66
Exon sequences
Seq C1 exon
CTCCCTCCTAGGCTGTGAGCACCCTCCCTTCTAGCCCGAGTGCCCTTCCTTCTAGCCTCTTCTTCTCCTTCCTCTCCCCTCTGCCCTTCCTCGGTCCTAAGCTCCCACTTTCCATCTCCACACTCCGGGCATCTTGCCCTCAGACCGTCACCTGCACCCAAGCCCATTAGTGCACCCTCCCGCGGCAGGTCTCTCGAAGACCCTCCGCTTTAGCCTGTGCCCCGGAGCAGTGTTCCCGCTTCCCGGGTTCCTCCCCCCGATCACCCGCAACGCTGCCCCACACCCTCTCCCTCCGCGTCTTTCCTTCCCCTCCCCGCGAAGTTTCAGGGCTGTCAGTCCCGGAGTCTTTCGGGCAGCCCGCACCCAAGCTGCAGGCAGCCGGCGCCATTGTGCAAACGGCCGCCCGGGACCGGAGGCCCGAGCGCCTGGGTCCCCGAAGCGGGCCGCGGCACGTAGCCGCAGGAGCCCGCCAG
Seq A exon
GTAAGGACACCCGAGACTCCCGGGCAGGCGTCTCCCCCGCCACCCAAACGGAGCTTTACAAGCCCTGCCGACCCACGGCAGGTGACAACCCCGAGGGAAGGGGCGCGCAGACGCGAGTGTGGGGGAGGGGGGGGGTCAGACCAGGAGGGAAGGGAGTCAGGAGGGAGGGTCCTGGCGCAGATGGGGAGACTAGGAAACTGGAGGGGAGGGCAAGGACTCGGGGAGGCCCGGTGGGAGCAGGTGGGAAGAGGGCGGGAGGGGCCTGCGGGGAGGATCCCCAGGAGCGGGAGTAGGGTTCCTCGGGATAGAGGAAGGGTCCAGTGCGAAAGGGCAGGAAACGGGCTCAGGGATGGGGCTGGTCGGGAGCGAAGGACGCTGACAGGTGAGCCTAGAGCAGGGCAGGGGGCCGGGACCCGGAGTGACTCCGGAGCTCTAACAGGGGCGGGGATTGGGGGGAGTCTAGTCAGAAGGAAAACTCCGGAGAGGGCGTGAAGTCAGTGGGGAGCAGAAATGGGCAAGGGGGCTGCTGAGAGGGAGGTGTGTTGGGAAGAAAGGGGTATGGGGAGGGGCAGAACGAGGGAGTAGGTCCAGAGAATGTGGGGTTAGCTTGGATTCCCCCCCCCAAGATGGGGGGCGTGAGACCTGGAAGCTAGGGAGCGGACTAGGAGGGGGAGGGGAAGAACAAGGCTGGGGACCGGGAGGGGAGAGAAGCGGAGCCGGAGCTTGCAGGGTAGGCAGAGGGGGAAGGGAGGCGGGGGCCGCTGAGGGGGGAAGGAGAGCAGCGGGAGGGAGGGAAGCAGAGGGGAGGCTGGTGTGGGGGAGGGGGAGGGAACTGAGGAGAGGAAAGAAGGAAAAGAAACCCGAGTGGGGGAGGAGAGGGGAGGGGCAAGCGGATGGGGGAGAGCAGCTGAGAAGGGGAGGGCGGGAGTGGGGGGGGGGAGGAAGGAAAAGAGGAGGGGGAAGGAAGGGAGGGAGTGTGCAGCCTGGGGAGGGGGTGGCGTGCGGAGAACTAGGCGGGCGGGCACAGGAGGAAGGGGGAGGGGAGCGCTGCCCAAGACTGCTGGTAGAGGAGGGTCGGGAGAGGCCGTAGCTGCTGAGGGCCGACTCGAAGGGGGCCCCTGGGGGTTGACCCGACGGGTGCGCGCAAGGGAGGAGCCAAAGGGGCGGGGCAAGAGGAGGAGCCCCAAAAGGCTGCCAGATTTGGTGGGGAGAGAGGGCGGAAGGCAGCGAGAGGGGAGGGGCAGAGGGAAGGCTGCCAGGGAAGGGGGAGGGGAGCCTGCTAAAGGAGGGGCAGAGAACCGGTTGGAAGTGGAGCTGAGAAGTGCAAAAATCGGGGAGTGTCCTGGCCTGGTGTGGGGGTTGTTCTCGCCCGGTTAGTCCTATGGGGGTTGTGAGTCTTTGAGGTAGGGGTTTAGGGAGAGGAAGTCAGAGTCATTTACTACCTCTGCAATAGCCCTTGTTCACCTCCTCCCACCCCCGTATCCCTAAAGTGTTACTGGTCCTCCAGGGCTGGCTCTCATTTCACTAGCTACTGCCCTAGGGGCTGAAGGGTCCACGTGTAGCTTCCCTCTCCCCATCTTGGTCCAGAGAATTAAGTGGTCCCTGTACTTACCCTGGCAAAGACACAGTGGGTGGTGAGTGACTGCTGATGGTTTGGGGACGGTTTTGAAGACTTGACAGGTGGGGACCAGGGCTGATATCCATTGCCAAGCAGAGTTTGCAGGAGGCTCCATGTGATTGGGTATTCATCTTCAGAGGCCTCTGTTCCCTCACCTGTGCCTAGGGCTTCACTTTGGAGTTCTTGGGGATAGCTGAGACCTAGCTGGAGGCCATCAGGAAGAATCTGAACAGGGCTGTCTTTTTAG
Seq C2 exon
GGTCTGTGGCCTGATCACCTAGGAGAGCCACTCCTGGTGGCCATGAGAGAGACCCTGGAGGCCCTGAACTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068551:ENSMUST00000114561:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.865
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGAAGACCCTCCGCTTTA
R:
CCTCCAGGGTCTCTCTCATGG
Band lengths:
343-2208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types