HsaINT0187340 @ hg19
Intron Retention
Gene
ENSG00000181444 | ZNF467
Description
zinc finger protein 467 [Source:HGNC Symbol;Acc:23154]
Coordinates
chr7:149468088-149470295:-
Coord C1 exon
chr7:149470197-149470295
Coord A exon
chr7:149468164-149470196
Coord C2 exon
chr7:149468088-149468163
Length
2033 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
AGGCTGTCTTTTCTCCATAGGTT
3' ss Score
10.83
Exon sequences
Seq C1 exon
GAGCTGCAGGCGGCGAGCGCCATTGTGAGCAGAGCCGGCGGGGCAGGAGGCCCGGGCGCCTGGGTCCCCGCGGCGCGGGCGGAGCGGCCGGCCAGCCAG
Seq A exon
GTAAGGGCCGGGGAGGCTCCTCTGCAGGCGGCCCCGCCCGCGTCTCCCTCAGCGCCGCGGTTGGGTCACGGCCGGCTCCGCGCAGGTGACAGCCCCGGGGGTAGGGGCGCGGACGGCGGGCGTGGGGGAGGGGCGCGGGTCCGGGGAGGTCGGGGGCTGGGGGGAAGGGAGGGCAAGGCCGGCGCGGGCAGGGTGAGGGCTGTGGGGGTAGAGGAGACCGGGGGGGCTGGAGGGAAGGGCGGGGGCTGGGAGGGGGTCGGGCGGGAGGCAGGTGGGAAGGGGGACGACGGGCCCCGAGGGGAGGAGAGAGGGAGTGTGGGAGGGGGCCGAGGGGGAAGGGGAGGAAGAAGCGGGCGCTGGGGACCGGGCCACTCGGTAGGGGCGGGAGAGGAGGGCGCTGACAGGTGAGCCCCGGAGCTGGGGAGGGGGCCGGGACCTGGAATGAAGTCGGCGATCGGAGCTGCTTGGGAGGGCGGCGGGGCAGGGAGGTGGAGCTGAGGGTCCCGTCGGGAGGAAAACTTGGGAGGGGTGAGAAGTCCGAGGGGAGCAGAAATAGGGAGGGGGCGCCGCGGCGGAGAAGAGAGGCGCGGAGGGGTGTTCGGAGGGGAGACGGAGTGGGGAGGGCAGGGCCCGCGGGAAGGTCCCGAGAGAGCGGGTCAGCCCTAGACCCCCAGGCTTGGGGGCCGGAGGACCCGGGAGCTGGGAAGCAGCCTGGGAGGGGGGAGGGGAAGAGCGGTTCTGGGGACTGGGGACGGGGAGGGAAGCGAAGCTGGAGCCTGCTGGGGAGACAGAGGGGGAAGGGAGGCGGGGGCCTCGGAGGGGAAGGAGAGCTGCAGAAGGGAGGGGGGAGGGGGAGGGCGGTGGGGAGACGTGGGGGAGGGCTGGAAAGGGGGAGGGGAAGGGAACCGAGGTGAGGCGAGGAAAGGAGAAGGAAGGGAAACCGGGGTGGGGGAGGAGAGGAGGGAGGGGAGAGGAGAACTGGGTTGGGGAAAAGAGCTGAGAGGAGGAGGGCGGGGGTTGGCGAGGAAGGAAAAGAGGAGGGGGAAAGGAAGGGAGAGGGTGTGCAGCCGGGGAGGGAGATGGAGCGGGGGAGAACCGGGAGGGTAGGGAAAGGCAGCCTGGAGTCTGAGAGGGGGAGGGGAGCGCTGCCGCCGAGGCGGCCCGGAGCGTAGGGTCAGGGGAGGCGGTGGCAGCGGAGGGCCGACCCGGACGGGGCCTCGAGGGGTTGGCCCTGCCGGGCTCGGGCGGGCGGAGCCTGAGGGGCGGGGCCGGGGGCGGAGCCGAGGCGCCGGCCCGATTCGCAGGGGAGAGAGGGCGGAAGGCAGAGGGAGCGGGAGGGGCGGGGCAGAGGGAAGGCTGCCGGGGAGATGGGGGAGGGGAGTCTGCTGGGGGAGGGGCGGGGGAGCCGCGGAAGGCGGAGCAGGGAAGGGGCAGCAGGGGCGGTGTCCGGGCCTTGGGCAGCCCGGCACGGGTGAGAGGTGGTTTTGTGGTAGGGGTTTAGGAAGAGGCGATCATTTTCTAGCTACAAGAGGATCCTCTCGAGGACCTCCCCAAGCAGTACCCCTAAAGTGACACTCACTCCCGCCCCTGGGCTGGCTCCTATTTCACCAGCTCGGGCAGTGACAGCTGGAGGACCTGGGAGATGAAGTTTCCCACTCCCCACCCTGGGCTCCCACCCTCAAGCCTCTCCCCAGAGAATCGAATCTTGCCTGCACTTTCCCAGGCAAGGACGCTGGGGCGTGGAGTTGCGGTGCTGATGGGCCGGGGTTGGCGGTGACAGACCTGCCAGGTGAGGGGGTGGCGCGGCTGGTTTCCAGAGCTGACAGAAATCGTTTCAAGGCCTTCTTGGGCCACCTTCAAAGATCTCTTGGCTTGGCTTTCTAAACCCAGTTTCCCAAATTTCCCCCAGCTGTACCTGGGGATGTCACCTTTGGAGCTCCTGGAAGAGCCCATAGGGAGAGGTTGGGCAGAGCCAGGGCCCAGGTGGAAGCTGGCGTGGGAAAAATCTGAACAAGGCTGTCTTTTCTCCATAG
Seq C2 exon
GTTCTGTGGCCTGATCCCCAGGAGGAGCTACTCTGGGTTACCATGAGAGAGACCTTGGAGGCCCTCAGCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181444-ZNF467:NM_207336:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)