MmuINT0179323 @ mm9
Intron Retention
Gene
ENSMUSG00000068551 | Zfp467
Description
zinc finger protein 467 [Source:MGI Symbol;Acc:MGI:1916160]
Coordinates
chr6:48393411-48395824:-
Coord C1 exon
chr6:48395352-48395824
Coord A exon
chr6:48393487-48395351
Coord C2 exon
chr6:48393411-48393486
Length
1865 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GAACAGGGCTGTCTTTTTAGGGT
3' ss Score
5.66
Exon sequences
Seq C1 exon
CTCCCTCCTAGGCTGTGAGCACCCTCCCTTCTAGCCCGAGTGCCCTTCCTTCTAGCCTCTTCTTCTCCTTCCTCTCCCCTCTGCCCTTCCTCGGTCCTAAGCTCCCACTTTCCATCTCCACACTCCGGGCATCTTGCCCTCAGACCGTCACCTGCACCCAAGCCCATTAGTGCACCCTCCCGCGGCAGGTCTCTCGAAGACCCTCCGCTTTAGCCTGTGCCCCGGAGCAGTGTTCCCGCTTCCCGGGTTCCTCCCCCCGATCACCCGCAACGCTGCCCCACACCCTCTCCCTCCGCGTCTTTCCTTCCCCTCCCCGCGAAGTTTCAGGGCTGTCAGTCCCGGAGTCTTTCGGGCAGCCCGCACCCAAGCTGCAGGCAGCCGGCGCCATTGTGCAAACGGCCGCCCGGGACCGGAGGCCCGAGCGCCTGGGTCCCCGAAGCGGGCCGCGGCACGTAGCCGCAGGAGCCCGCCAG
Seq A exon
GTAAGGACACCCGAGACTCCCGGGCAGGCGTCTCCCCCGCCACCCAAACGGAGCTTTACAAGCCCTGCCGACCCACGGCAGGTGACAACCCCGAGGGAAGGGGCGCGCAGACGCGAGTGTGGGGGAGGGGGGGGGTCAGACCAGGAGGGAAGGGAGTCAGGAGGGAGGGTCCTGGCGCAGATGGGGAGACTAGGAAACTGGAGGGGAGGGCAAGGACTCGGGGAGGCCCGGTGGGAGCAGGTGGGAAGAGGGCGGGAGGGGCCTGCGGGGAGGATCCCCAGGAGCGGGAGTAGGGTTCCTCGGGATAGAGGAAGGGTCCAGTGCGAAAGGGCAGGAAACGGGCTCAGGGATGGGGCTGGTCGGGAGCGAAGGACGCTGACAGGTGAGCCTAGAGCAGGGCAGGGGGCCGGGACCCGGAGTGACTCCGGAGCTCTAACAGGGGCGGGGATTGGGGGGAGTCTAGTCAGAAGGAAAACTCCGGAGAGGGCGTGAAGTCAGTGGGGAGCAGAAATGGGCAAGGGGGCTGCTGAGAGGGAGGTGTGTTGGGAAGAAAGGGGTATGGGGAGGGGCAGAACGAGGGAGTAGGTCCAGAGAATGTGGGGTTAGCTTGGATTCCCCCCCCCAAGATGGGGGGCGTGAGACCTGGAAGCTAGGGAGCGGACTAGGAGGGGGAGGGGAAGAACAAGGCTGGGGACCGGGAGGGGAGAGAAGCGGAGCCGGAGCTTGCAGGGTAGGCAGAGGGGGAAGGGAGGCGGGGGCCGCTGAGGGGGGAAGGAGAGCAGCGGGAGGGAGGGAAGCAGAGGGGAGGCTGGTGTGGGGGAGGGGGAGGGAACTGAGGAGAGGAAAGAAGGAAAAGAAACCCGAGTGGGGGAGGAGAGGGGAGGGGCAAGCGGATGGGGGAGAGCAGCTGAGAAGGGGAGGGCGGGAGTGGGGGGGGGGAGGAAGGAAAAGAGGAGGGGGAAGGAAGGGAGGGAGTGTGCAGCCTGGGGAGGGGGTGGCGTGCGGAGAACTAGGCGGGCGGGCACAGGAGGAAGGGGGAGGGGAGCGCTGCCCAAGACTGCTGGTAGAGGAGGGTCGGGAGAGGCCGTAGCTGCTGAGGGCCGACTCGAAGGGGGCCCCTGGGGGTTGACCCGACGGGTGCGCGCAAGGGAGGAGCCAAAGGGGCGGGGCAAGAGGAGGAGCCCCAAAAGGCTGCCAGATTTGGTGGGGAGAGAGGGCGGAAGGCAGCGAGAGGGGAGGGGCAGAGGGAAGGCTGCCAGGGAAGGGGGAGGGGAGCCTGCTAAAGGAGGGGCAGAGAACCGGTTGGAAGTGGAGCTGAGAAGTGCAAAAATCGGGGAGTGTCCTGGCCTGGTGTGGGGGTTGTTCTCGCCCGGTTAGTCCTATGGGGGTTGTGAGTCTTTGAGGTAGGGGTTTAGGGAGAGGAAGTCAGAGTCATTTACTACCTCTGCAATAGCCCTTGTTCACCTCCTCCCACCCCCGTATCCCTAAAGTGTTACTGGTCCTCCAGGGCTGGCTCTCATTTCACTAGCTACTGCCCTAGGGGCTGAAGGGTCCACGTGTAGCTTCCCTCTCCCCATCTTGGTCCAGAGAATTAAGTGGTCCCTGTACTTACCCTGGCAAAGACACAGTGGGTGGTGAGTGACTGCTGATGGTTTGGGGACGGTTTTGAAGACTTGACAGGTGGGGACCAGGGCTGATATCCATTGCCAAGCAGAGTTTGCAGGAGGCTCCATGTGATTGGGTATTCATCTTCAGAGGCCTCTGTTCCCTCACCTGTGCCTAGGGCTTCACTTTGGAGTTCTTGGGGATAGCTGAGACCTAGCTGGAGGCCATCAGGAAGAATCTGAACAGGGCTGTCTTTTTAG
Seq C2 exon
GGTCTGTGGCCTGATCACCTAGGAGAGCCACTCCTGGTGGCCATGAGAGAGACCCTGGAGGCCCTGAACTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068551-Zfp467:NM_020589:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.865
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGAAGACCCTCCGCTTTA
R:
CCTCCAGGGTCTCTCTCATGG
Band lengths:
343-2208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: