Special

MmuINT0179318 @ mm9

Intron Retention

Gene
ENSMUSG00000068551 | Zfp467
Description
zinc finger protein 467 [Source:MGI Symbol;Acc:MGI:1916160]
Coordinates
chr6:48393411-48395089:-
Coord C1 exon
chr6:48394970-48395089
Coord A exon
chr6:48393487-48394969
Coord C2 exon
chr6:48393411-48393486
Length
1483 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GAACAGGGCTGTCTTTTTAGGGT
3' ss Score
5.66
Exon sequences
Seq C1 exon
CTGCGGGGAGGATCCCCAGGAGCGGGAGTAGGGTTCCTCGGGATAGAGGAAGGGTCCAGTGCGAAAGGGCAGGAAACGGGCTCAGGGATGGGGCTGGTCGGGAGCGAAGGACGCTGACAG
Seq A exon
GTGAGCCTAGAGCAGGGCAGGGGGCCGGGACCCGGAGTGACTCCGGAGCTCTAACAGGGGCGGGGATTGGGGGGAGTCTAGTCAGAAGGAAAACTCCGGAGAGGGCGTGAAGTCAGTGGGGAGCAGAAATGGGCAAGGGGGCTGCTGAGAGGGAGGTGTGTTGGGAAGAAAGGGGTATGGGGAGGGGCAGAACGAGGGAGTAGGTCCAGAGAATGTGGGGTTAGCTTGGATTCCCCCCCCCAAGATGGGGGGCGTGAGACCTGGAAGCTAGGGAGCGGACTAGGAGGGGGAGGGGAAGAACAAGGCTGGGGACCGGGAGGGGAGAGAAGCGGAGCCGGAGCTTGCAGGGTAGGCAGAGGGGGAAGGGAGGCGGGGGCCGCTGAGGGGGGAAGGAGAGCAGCGGGAGGGAGGGAAGCAGAGGGGAGGCTGGTGTGGGGGAGGGGGAGGGAACTGAGGAGAGGAAAGAAGGAAAAGAAACCCGAGTGGGGGAGGAGAGGGGAGGGGCAAGCGGATGGGGGAGAGCAGCTGAGAAGGGGAGGGCGGGAGTGGGGGGGGGGAGGAAGGAAAAGAGGAGGGGGAAGGAAGGGAGGGAGTGTGCAGCCTGGGGAGGGGGTGGCGTGCGGAGAACTAGGCGGGCGGGCACAGGAGGAAGGGGGAGGGGAGCGCTGCCCAAGACTGCTGGTAGAGGAGGGTCGGGAGAGGCCGTAGCTGCTGAGGGCCGACTCGAAGGGGGCCCCTGGGGGTTGACCCGACGGGTGCGCGCAAGGGAGGAGCCAAAGGGGCGGGGCAAGAGGAGGAGCCCCAAAAGGCTGCCAGATTTGGTGGGGAGAGAGGGCGGAAGGCAGCGAGAGGGGAGGGGCAGAGGGAAGGCTGCCAGGGAAGGGGGAGGGGAGCCTGCTAAAGGAGGGGCAGAGAACCGGTTGGAAGTGGAGCTGAGAAGTGCAAAAATCGGGGAGTGTCCTGGCCTGGTGTGGGGGTTGTTCTCGCCCGGTTAGTCCTATGGGGGTTGTGAGTCTTTGAGGTAGGGGTTTAGGGAGAGGAAGTCAGAGTCATTTACTACCTCTGCAATAGCCCTTGTTCACCTCCTCCCACCCCCGTATCCCTAAAGTGTTACTGGTCCTCCAGGGCTGGCTCTCATTTCACTAGCTACTGCCCTAGGGGCTGAAGGGTCCACGTGTAGCTTCCCTCTCCCCATCTTGGTCCAGAGAATTAAGTGGTCCCTGTACTTACCCTGGCAAAGACACAGTGGGTGGTGAGTGACTGCTGATGGTTTGGGGACGGTTTTGAAGACTTGACAGGTGGGGACCAGGGCTGATATCCATTGCCAAGCAGAGTTTGCAGGAGGCTCCATGTGATTGGGTATTCATCTTCAGAGGCCTCTGTTCCCTCACCTGTGCCTAGGGCTTCACTTTGGAGTTCTTGGGGATAGCTGAGACCTAGCTGGAGGCCATCAGGAAGAATCTGAACAGGGCTGTCTTTTTAG
Seq C2 exon
GGTCTGTGGCCTGATCACCTAGGAGAGCCACTCCTGGTGGCCATGAGAGAGACCCTGGAGGCCCTGAACTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068551-Zfp467:NM_001085415:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.865
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000098986, ENSMUSP00000110205, ENSMUSP00000110206, ENSMUSP00000110207, ENSMUSP00000110207f5972A, ENSMUSP00000110208, ENSMUSP00000110210, ENSMUSP00000110213
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr7:149771075-149773107 
ALTERNATIVE
HsaINT1047490
(ZNF467)
Human
(hg19)
chr7:149468164-149469792 
HsaINT0187340
(ZNF467)
Rat
(rn6)
chr4:78075441-78077306 
Cow
(bosTau6)
chr4:113431128-113433686 
Chicken
(galGal4)
chr2:496784-497857 
Chicken
(galGal3)
chr2:407046-408048 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGAGGATCCCCAGGAGCG

				
R: 
CCAAGGAGTTCAGGGCCTCC

				
Band lengths: 
190-1673

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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