MmuEX0053372 @ mm9
Exon Skipping
Gene
ENSMUSG00000068551 | Zfp467
Description
zinc finger protein 467 [Source:MGI Symbol;Acc:MGI:1916160]
Coordinates
chr6:48392624-48395463:-
Coord C1 exon
chr6:48395352-48395463
Coord A exon
chr6:48393411-48393486
Coord C2 exon
chr6:48392624-48392737
Length
76 bp
Sequences
Splice sites
3' ss Seq
GAACAGGGCTGTCTTTTTAGGGT
3' ss Score
5.66
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ACCCAAGCTGCAGGCAGCCGGCGCCATTGTGCAAACGGCCGCCCGGGACCGGAGGCCCGAGCGCCTGGGTCCCCGAAGCGGGCCGCGGCACGTAGCCGCAGGAGCCCGCCAG
Seq A exon
GGTCTGTGGCCTGATCACCTAGGAGAGCCACTCCTGGTGGCCATGAGAGAGACCCTGGAGGCCCTGAACTCCTTGG
Seq C2 exon
GATTCTCAGTGGGACAGCCAGAGATGGCTCCCCAGAGTGAGCCCAGGGATGGGTTCAGTAATGCCCAGGAGAAGATGTCATCCAGAGGAGAGAGCACACTGCACTCCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068551-'0-5,'0-3,4-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.865 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGTGCAAACGGCCGC
R:
GGATGACATCTTCTCCTGGGC
Band lengths:
171-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: