RnoEX0101428 @ rn6
Exon Skipping
Gene
ENSRNOG00000007707 | Zfp467
Description
zinc finger protein 467 [Source:RGD Symbol;Acc:1561603]
Coordinates
chr4:78074618-78078190:-
Coord C1 exon
chr4:78077307-78078190
Coord A exon
chr4:78075365-78075440
Coord C2 exon
chr4:78074618-78074731
Length
76 bp
Sequences
Splice sites
3' ss Seq
GAACAGGGCTATCTTTTTAGGGT
3' ss Score
5.23
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CCGTTCCGCGCTCCACCTTTCCCCAGCTCCTCCCTCCTAGGCTGTGAGCACCCTCCCTTCTAGCCCGAGTGCCCTTCCTCCCTAGCCTCTTCTCCTTCCTCTCCCCTCTGCCCTTCCTCGGTCCTAAGCTCCCACTTTCCATCTCCACACTCCGGGCATCTTGCCTGCAGACCGTCACCTGCACTGAAACCCATTAGTGCACCCTCCCGCGACGGGTCTCTCGAAGACCCTCCGCCTCAGCCTGGTGCCCCGAAGCACTGTTCCCGCTTTCCGGGTTCCTCCCCCATCACCCGCAACGCTACCCCGCACCCTCTCCCTCCACATCTTTCCTTCCCCTCCCCGCGAAGTTTCAGGGCTGTCAGTCCGGGAGTCTTTCGGGCAGCCCGCACCCAAGCTGCAGGCAGCCGGCGCCATTGTGCAAACGGCCGCCCGGGACCGGAGGCCCGAGCGCCTGGGTCCCCCAAAGCGGGCCGCGGCACGTAGCCGCAGGAGCCCGCCAG
Seq A exon
GGTCTGTGGCCTGATCACCTAGGAGAGCCACTCCTGGTGGCCATGAGAGAGACCCTGGAGGCCCTGAACTCTTTGG
Seq C2 exon
GATTCTCAGTGGGACAGCCAGAGATGGCACCCCAAAGTGAGCCCAGGGATGGGTTCAGTAATCCCCAGGAGAAGATGTCATCTAGAGATGAGAGCACACTGCACTCATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007707_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGTTTCAGGGCTGTCAGT
R:
TCTGGCTGTCCCACTGAGAAT
Band lengths:
180-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]