RnoINT0168264 @ rn6
Intron Retention
Gene
ENSRNOG00000007707 | Zfp467
Description
zinc finger protein 467 [Source:RGD Symbol;Acc:1561603]
Coordinates
chr4:78074618-78075398:-
Coord C1 exon
chr4:78075365-78075398
Coord A exon
chr4:78074732-78075364
Coord C2 exon
chr4:78074618-78074731
Length
633 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CATTCCTCTGCCTCTAACAGGAT
3' ss Score
9.71
Exon sequences
Seq C1 exon
ATGAGAGAGACCCTGGAGGCCCTGAACTCTTTGG
Seq A exon
GTGAGTGGGGACAAAGGAACCAGGAGGGTGGGAGTTCCTAGGCATCCGAAGTGTAGTAGTATTGTCCACAGGAGTTTACAACCTTGACCCCAAACCATGGCAGCCGGAGACATGGCAGACATCTTTTTAGGTCACCATTATATGTCTCAGTGACCAGAGCAAGATGATAATACTAGATTGTATGTATGTATGTATGGGATTCACAGAGAAATGGAAGCTAAAAACAAGCAAACTTATTGCACTTACATATTTATTGTGCTTATTATGTGTGCCTCATATGTGGAGGTGAGAGAACAATTTTCTGAGTTATCTCCTACCATGTGGGTTTTGGAAACCAAATGCAGATAACTAGGTGTGAAGGCAAGTACCTTTACCACTGAGCCATCTCCCCTGCCCAACACTGGAATTCATTTTTTTTTCTATTTCAAACTATTCAATTTCTTTTCTTTCTTTTTTCTTCCCTCAATTAAAAGGGCTGAGCTTAACGCCTGGCCAGACTGCTGAGAAGCTCTGTCTCTTATCCATGCAGACAAGAGATACCTTTCTTCCCAAACCAGCTGGGAAAATGCCCCATCTCTGATACCAGTCCAGTACTAGAATCTTCATTTGAACTCATTCCTCTGCCTCTAACAG
Seq C2 exon
GATTCTCAGTGGGACAGCCAGAGATGGCACCCCAAAGTGAGCCCAGGGATGGGTTCAGTAATCCCCAGGAGAAGATGTCATCTAGAGATGAGAGCACACTGCACTCATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007707:ENSRNOT00000010377:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]