RnoEX0101425 @ rn6
Exon Skipping
Gene
ENSRNOG00000007707 | Zfp467
Description
zinc finger protein 467 [Source:RGD Symbol;Acc:1561603]
Coordinates
chr4:78073763-78075398:-
Coord C1 exon
chr4:78075365-78075398
Coord A exon
chr4:78074618-78074731
Coord C2 exon
chr4:78073763-78074210
Length
114 bp
Sequences
Splice sites
3' ss Seq
CATTCCTCTGCCTCTAACAGGAT
3' ss Score
9.71
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATGAGAGAGACCCTGGAGGCCCTGAACTCTTTGG
Seq A exon
GATTCTCAGTGGGACAGCCAGAGATGGCACCCCAAAGTGAGCCCAGGGATGGGTTCAGTAATCCCCAGGAGAAGATGTCATCTAGAGATGAGAGCACACTGCACTCATGCTCAG
Seq C2 exon
GATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAAAAAAAAAAGAAAGCCAAAGTTCTTCCCTTCTTTCCTTCCACCTCCTTAAAAAAACACATAGTCCAGAAATTCCTCATAGTTGTGGTTCCTGTCCCCCCTTAGCACCTGCTTCTGCCACTGGGAATGTGCCTTTTCAGGTATGATGTAGGACAGAGATCTTTGGGGAGTTCAGACTTGCTTCCCTACCCCCTAGATGGGGTTTGCCTTCCACCTGTGATGTTTTTGGAGTCCTTGGGGCATCCTCTTCTCTTTTAGGGCCTGAGACCCCTGGCCAGAAAGAAGGTATCCACACAGAACAAGCTGAAGCTCCTTGTATGGGCAGCCAGGCCTGTATCCCACAGAAGGCCGAGCCTGCAAGCTCTGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007707-'5-4,'5-3,6-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGAGAGACCCTGGAGGC
R:
AAAAGGCACATTCCCAGTGGC
Band lengths:
247-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]