HsaEX0073752 @ hg19
Exon Skipping
Gene
ENSG00000181444 | ZNF467
Description
zinc finger protein 467 [Source:HGNC Symbol;Acc:23154]
Coordinates
chr7:149466179-149468163:-
Coord C1 exon
chr7:149468088-149468163
Coord A exon
chr7:149467529-149467645
Coord C2 exon
chr7:149466179-149466289
Length
117 bp
Sequences
Splice sites
3' ss Seq
CATCCTTCTGCCTGTAACAGGAT
3' ss Score
9.21
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTTCTGTGGCCTGATCCCCAGGAGGAGCTACTCTGGGTTACCATGAGAGAGACCTTGGAGGCCCTCAGCTCCCTGG
Seq A exon
GATTCTCTGTGGGACAGCCAGAGATGGCCCCCCAAAGTGAGCCCAGGGAAGGATCCCATAATGCCCAGGAGCAGATGTCCTCTTCTAGGGAAGAGAGAGCACTGGGGGTGTGCTCAG
Seq C2 exon
GGCACGAGGCCCCTACACCGGAGGAAGGTGCCCACACAGAACAAGCCGAGGCTCCCTGCAGAGGCCAGGCGTGCTCAGCACAGAAGGCTCAGCCTGTGGGTACCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181444-'2-5,'2-2,3-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.816
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGTGGCCTGATCCCCAG
R:
AGGTACCCACAGGCTGAGC
Band lengths:
180-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)