MmuEX6004182 @ mm10
Exon Skipping
Gene
ENSMUSG00000068551 | Zfp467
Description
zinc finger protein 467 [Source:MGI Symbol;Acc:MGI:1916160]
Coordinates
chr6:48441947-48443487:-
Coord C1 exon
chr6:48443412-48443487
Coord A exon
chr6:48442625-48442738
Coord C2 exon
chr6:48441947-48442060
Length
114 bp
Sequences
Splice sites
3' ss Seq
CATCCCTCTGCCTATAACAGGAT
3' ss Score
8.51
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGTCTGTGGCCTGATCACCTAGGAGAGCCACTCCTGGTGGCCATGAGAGAGACCCTGGAGGCCCTGAACTCCTTGG
Seq A exon
GATTCTCAGTGGGACAGCCAGAGATGGCTCCCCAGAGTGAGCCCAGGGATGGGTTCAGTAATGCCCAGGAGAAGATGTCATCCAGAGGAGAGAGCACACTGCACTCCTGCTCAG
Seq C2 exon
GGCATGAGACTCCTGGCCAGAAAGAAGGCATCCACACAGAACAAGCTGAAGCTCCTTGTATGGGCAGCCAGGCCAGTACCCCACAGAAGGCCGAACCTGCAGGCTCTGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068551-'9-9,'9-8,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.865 A=1.000 C2=0.974
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGGCCTGATCACCTAGG
R:
GGGACAGAGCCTGCAGGTTC
Band lengths:
186-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types