BtaEX6029357 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019844 | ZNF467
Description
zinc finger protein 467 [Source:HGNC Symbol;Acc:HGNC:23154]
Coordinates
chr4:113429308-113431085:-
Coord C1 exon
chr4:113431052-113431085
Coord A exon
chr4:113430128-113430244
Coord C2 exon
chr4:113429308-113429421
Length
117 bp
Sequences
Splice sites
3' ss Seq
CATCCTTTTGCCTGTAATAGGAC
3' ss Score
8.68
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATGAGAGAGACCTTGGAGGCCCTCAGCTCCCTGG
Seq A exon
GACTCTCTGTGGGACAGCCGGAGATGACCCCCCAAAGTGAGCCTGGGGAACAGTCCCACGATGCCCAGGAGCGGATGTCTCCTCCCCAGGAACAGAGAGTGCTGGGTACAAGCTCAG
Seq C2 exon
GGCGCGAGGCCCCCAGGCCGGAGAAAGGTGCCCGCACGGAACAAGCTGAAACTCCCTGCAGAGAAGACCAGGTGTGTGCACCACGCAAGCCTGAGCCCACGGGCTCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019844-'5-5,'5-2,6-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGAGAGACCTTGGAGGCC
R:
GCTCAGGCTTGCGTGGTG
Band lengths:
130-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]