MmuINT0179319 @ mm10
Intron Retention
Gene
ENSMUSG00000068551 | Zfp467
Description
zinc finger protein 467 [Source:MGI Symbol;Acc:MGI:1916160]
Coordinates
chr6:48442625-48443487:-
Coord C1 exon
chr6:48443412-48443487
Coord A exon
chr6:48442739-48443411
Coord C2 exon
chr6:48442625-48442738
Length
673 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CATCCCTCTGCCTATAACAGGAT
3' ss Score
8.51
Exon sequences
Seq C1 exon
GGTCTGTGGCCTGATCACCTAGGAGAGCCACTCCTGGTGGCCATGAGAGAGACCCTGGAGGCCCTGAACTCCTTGG
Seq A exon
GTGAGTGGGGGACAAAGGAACCAGGAGGGTGGGAGTTCCTAGGCATCCGAAGTGTAGCAGTGTCGTCCCTCAGGGGTATACAACCCTGAGCCCCAAACCATGGCAGCCTGGAGAAGCAGACATCTTTTTAGGTCACCATTATGTATCTCAGTGACCAGACCAGGATGATAATACTAGATTGTATGTGTGCATGGGATTCACAGAGAACTGGAAGCTAAAAGCAAGCAAGCAAGCAAACAAACAAACAAAACTCATTGCACTTACATATTTATTTATTGTGTTTATTATGTCTACCTCATGTGTGGAGGTGAGAGAACTTTTTTTTTTTTGAGTTATCTGCTACCATGTGGGTTTTGAACCAAATGCAGATCGTTAGGCACAGAGCAAGTACCTTTACCCACTGAGGCATCTCCCCCACCCAGCACTGGAATTCTTCTTCTTCTTTTTTTTTTTTTTTCCCTATTTCAAACTACCCAATTTCTTTTCTTTTTTCTCCCCTCGATTAAAAGGGCCGAGCTTAATACCTGGCCAGACTGCTGGGGAGCTTGGGCAGTCCTTTATCCATACAGACAAGAGGTACCTTTCTCCCCAGACCGGCTGGGAAAATGCCCCATCGCTGGTACCAGTTCAATACTAGAAGCTTCACTTGAACTCATCCCTCTGCCTATAACAG
Seq C2 exon
GATTCTCAGTGGGACAGCCAGAGATGGCTCCCCAGAGTGAGCCCAGGGATGGGTTCAGTAATGCCCAGGAGAAGATGTCATCCAGAGGAGAGAGCACACTGCACTCCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068551:ENSMUST00000114561:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.865 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGCCTGATCACCTAGGA
R:
CAGGAGTGCAGTGTGCTC
Band lengths:
182-855
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types