BtaINT0165565 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019844 | ZNF467
Description
zinc finger protein 467 [Source:HGNC Symbol;Acc:HGNC:23154]
Coordinates
chr4:113430128-113431085:-
Coord C1 exon
chr4:113431052-113431085
Coord A exon
chr4:113430245-113431051
Coord C2 exon
chr4:113430128-113430244
Length
807 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CATCCTTTTGCCTGTAATAGGAC
3' ss Score
8.68
Exon sequences
Seq C1 exon
ATGAGAGAGACCTTGGAGGCCCTCAGCTCCCTGG
Seq A exon
GTGAGCCGACAGAACTGGAGGAACTTGGGTGGGGGGCAGGGGAGTAGGAAGCTTCAAGGGCATACCATGCCTGTTGTTGTTCAGTCGCCCAGTCGAATCTGACTCTTTGCAACCCCATGGACTGCAGCACACCAGGCCTCCCTGTCCCTCACCATCTCCCGGAAGTTTGCCCAAGTTCATGTCCATTGCATCAGAGATGGCTCTTCACGGATCACTGCCTTGTCGTGGCAAAGGGGCTTGCATAACACAATGAAGCTATTAGCCATGCCCTGCAGGGCCACCCAAGACGGATGGGTCAAAATGGAGAGTTCTGACAAAACATGATCCACTGGAGGAGGGAATGGCAAACCACCCCAGTATACTTGCCATGAGAACCTCATGAACTGTTACCAGGCCTGCTGCTTCCCTAATTCAGACGGTAGAGCATCCCCAGGAGGCTGCGACCCTGATACCCCTGAGACCCTGGGGGCCTTTAGGGCAGCATCCTTTCTGGTTTCATCACAAAGAATGCCTGCCTGGTCCATGCTGGAGGTTGTGCTAGTACTAACAGAACACCAGGATAGTTAAATCTATTCTGTCTCTAAATCTATTCATCTCTGTCCTTGATTTGATGTAAAGCAGCTAAGGTTGATATTTGGTCAGGCTGCTGGGGAAGCTGGTTGTCCCTTGTCCGTGATGGTTAGAGACCTCGCTTTCCTTAACGCCCAGGGAAAACTCTTTTGGGCTGGGACAGGGAAGAGCAACCGTCTTGGATCACCTCTTCTGTACGACATGCTTGACTTGCACCCATCCTTTTGCCTGTAATAG
Seq C2 exon
GACTCTCTGTGGGACAGCCGGAGATGACCCCCCAAAGTGAGCCTGGGGAACAGTCCCACGATGCCCAGGAGCGGATGTCTCCTCCCCAGGAACAGAGAGTGCTGGGTACAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019844:ENSBTAT00000026440:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]