HsaEX0073751 @ hg38
Exon Skipping
Gene
ENSG00000181444 | ZNF467
Description
zinc finger protein 467 [Source:HGNC Symbol;Acc:HGNC:23154]
Coordinates
chr7:149764363-149773479:-
Coord C1 exon
chr7:149773108-149773479
Coord A exon
chr7:149770999-149771074
Coord C2 exon
chr7:149764363-149766239
Length
76 bp
Sequences
Splice sites
3' ss Seq
AGGCTGTCTTTTCTCCATAGGTT
3' ss Score
10.83
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GAGCTCCCACTTCCACACCTACTCCAGGCTCGGAGCCTTAGGACCATCACCTGCCCACCTAAGCCCACGGTGCTCCCTCCTGGGACCCCACTCCTGAAACCCCCTGCCCCTGCCTCCCCCAGCCCGGTGCGCCGGGGCTCTCCGCCCGCTCCCTCGGTCCCTCCTCCCTTGCAGGCGCCGTTTCCCGGCTTCGACTCCCCGCGCGTCTATCCCTCTCCTCCCCGCGAAGTTTCGGGGCTGTCAGTCTGTCAGTCTTTCAGGCCGTCAGCACCCGAGCTGCAGGCGGCGAGCGCCATTGTGAGCAGAGCCGGCGGGGCAGGAGGCCCGGGCGCCTGGGTCCCCGCGGCGCGGGCGGAGCGGCCGGCCAGCCAG
Seq A exon
GTTCTGTGGCCTGATCCCCAGGAGGAGCTACTCTGGGTTACCATGAGAGAGACCTTGGAGGCCCTCAGCTCCCTGG
Seq C2 exon
GAGAGGAGTGGATGATTCGGAAGGTGAAGGTGGAGGACGAAGATCAGGAGGCAGAAGAGGAGGTCGAATGGCCCCAGCATCTATCGTTACTTCCCAGCCCCTTTCCCGCGCCTGACCTGGGGCATCTGGCTGCCGCGTACAAACTGGAGCCAGGGGCCCCGGGGGCACTGAGTGGGCTCGCGCTGTCTGGGTGGGGTCCGATGCCGGAGAAGCCCTACGGCTGCGGGGAGTGTGAGCGGCGCTTCCGGGACCAGCTGACGTTGCGACTGCACCAGCGGCTGCACCGGGGCGAGGGCCCCTGCGCCTGCCCGGACTGCGGCCGCAGCTTCACGCAGCGCGCCCACATGCTACTGCATCAGCGCAGCCACCGCGGCGAGCGGCCTTTCCCGTGCTCCGAGTGCGACAAGCGCTTCAGCAAGAAGGCCCATCTGACCCGCCACCTGCGCACGCACACGGGCGAGCGGCCCTACCCGTGCGCGGAGTGCGGCAAGCGCTTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181444_MULTIEX1-2/5=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.361
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF0009621=zf-C2H2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.1),PF0009621=zf-C2H2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGTCTTTCAGGCCGTCAG
R:
CCTGATCTTCGTCCTCCACCT
Band lengths:
173-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development