HsaEX0073777 @ hg38
Exon Skipping
Gene
ENSG00000127081 | ZNF484
Description
zinc finger protein 484 [Source:HGNC Symbol;Acc:HGNC:23385]
Coordinates
chr9:92846069-92855903:-
Coord C1 exon
chr9:92855811-92855903
Coord A exon
chr9:92853914-92853958
Coord C2 exon
chr9:92846069-92848551
Length
45 bp
Sequences
Splice sites
3' ss Seq
CCTTTCCTTGCTCACTCTAGCCC
3' ss Score
7.72
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GATGTCAAGTTCCCAAACCAGAAGTCATCTTCAGCTTGGAACAAGAAGAGCCATGTATGTTGGATGGTGAGATCCCCAGTCAGAGCCGTCCAG
Seq A exon
CCCCATCTGGACCTGCTTGGAGCTGTCCCCAGAAAGCCTCATTAT
Seq C2 exon
ATGGGGACATTGGTTTTGGACCTTTACAACAGAGGATGTCTGAAGAAGTTTCTTTCCAGTCTGAGATTAATATTAATCTCTTCACAAGAGATGACCCATATTCCATTTTAGAAGAATTGTGGAAAGACGATGAACACACAAGAAAATGTGGAGAAAACCAGAACAAACCTTTAAGTCGTGTTGTCTTCATTAACAAGAAAACACTAGCTAATGACAGCATCTTTGAATATAAGGACATTGGGGAAATAGTTCATGTAAACACACACCTGGTTTCCTCAAGAAAAAGACCCCATAACTGTAACTCGTGTGGAAAGAATTTGGAGCCTATCATAACCTTATATAATAGAAACAATGCAACAGAAAATTCTGATAAGACTATTGGAGATGGTGATATTTTCACTCATTTGAATTCTCATACAGAAGTGACTGCTTGTGAATGTAACCAATGTGGGAAACCTCTGCATCATAAGCAAGCTCTCATTCAACAACAGAAAATTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127081_MULTIEX1-8/8=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.260 A=0.312 C2=0.058
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=2.5)
Main Inclusion Isoform:
ENST00000375495fB8160
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGTGAGATCCCCAGTCA
R:
TGGAATATGGGTCATCTCTTGTGA
Band lengths:
137-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development