HsaINT1047494 @ hg38
Intron Retention
Gene
ENSG00000127081 | ZNF484
Description
zinc finger protein 484 [Source:HGNC Symbol;Acc:HGNC:23385]
Coordinates
chr9:92846069-92855903:-
Coord C1 exon
chr9:92855811-92855903
Coord A exon
chr9:92848552-92855810
Coord C2 exon
chr9:92846069-92848551
Length
7259 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ATCTTTTCTTTCTTTTTTAGATG
3' ss Score
12.81
Exon sequences
Seq C1 exon
GATGTCAAGTTCCCAAACCAGAAGTCATCTTCAGCTTGGAACAAGAAGAGCCATGTATGTTGGATGGTGAGATCCCCAGTCAGAGCCGTCCAG
Seq A exon
GTGAGAAGGGAACCAAGAGCATGGTAGACAGTATGACTCAGCTGCATTTGTACTGGGAGAAGCTGTGCCCAACTTTGCCCAACTTTGATGTGTCATTAATAATGACTTTTAGAACTGCTTGGAAGAGCAGTTATTAGACAAGGACCCTTGGATAGCTAAATGCTAACCCCACTTAAGATCCCTTCTCATATCAATGCCTTCTTCTTTGCTTGGCTTTTTAGGAGGGAATATGCTACAATTACTGGTTCTTTGGATCATGTCACACTCTACTTTCTAGGGTCCTGTTTTCTTGCTTTTTTCTCTCTTTCCCTAGAAAAGTTTTATTCTTTCTACCTCCATCAAGGTCTTAGATCATTTCCTTATGCATTCAAATACTCATAGATCTACCTTCTGAAAACATTACTATGCATTACAACTTCAGCTCCTGCTGTTTCTTCTCATTTTGTCTCTTTCCCCTTAGTGCCTCACAATTGTCATCTAGAGATGGGCTTGTCTGAAGTCCCCCCATGCCTCTTCTCTGATTGTTGACTTTGAGAGTACCATTGACATTTTCTTCCTACTTGGCTAGTGCAACGCAACACTGACTTGATCTTTCTAATTTATTTATTTTCATATCTTACACAAAGTTTTTTATCTAGTGTACAGGTATATCCTGTACAGAAGATTGAGTTAATAATTATAGCCTTAGTTTTTAGTCAATATCATCATCAATGTGTTTAAGGCTCCCCTCTTATTTATTCTTTTTAATCCTCAGTCTCCATACTCATTTTTATCCTTCCAAGAGGCAACTGTTCTAATATATTTGACATGTTATGCCATTTATCCTTGAATTTCTGGGATATTTATAAAATCTGAGTTGTTGGCATTGTTAATTTGTAGAAATGGTACTGTATTATATATCCTACTCAAGTTTTTTTTTCTCAAATTGGTCCATGTTGCAGTGCATTATTCTAATTTCTACATATCATTCTGTAGTGCACATATATACCCCATTTTACTTGTCCAGTTTTTCAGCTACTACAAACAGTACTGCAATACATTTCTTCATGAATTATTCTTACTGGAAATGATAATTTATTTATTTATTTTTTTCTGAGATGGAGTTTCGCTCTGTCCCCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAAGCTCCACCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCCGGTAGCTGGGACTACAGGCGCCCGCCACTGCACCCAGCTAATTTTTTGTATGTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCGCCTTGGACTCCCAAAGTGCTGAGATTATAGGCGGGAGCCACCACGCCCAGCCGGAAATGAGAATTTCTTAAGGAAGAGGAGTGGGATTGCTTTATCATTGGGCATACTAATATTGAATATGATGAGGTATAAGCACATTATTTTCCAGATTGGCTGTGTCACTCTACGGTCCCTGGAACTTTGTACAAGGGTATTAGTTCCCCACATCCCTACCCATACCTAGTATTATCCAAATTTTTAATATTTTGGCTAATCTGATGGGTTTTAATTTCTAATTATTATTTAATTTGTATTTCCCTAATAAAATACTTTGAACATCTCATTCTGTATCCTTCATTTTTGATGTTCAACTGCTGATGTTTTCTAAGCCTCATCTCTCTCTCTTTTTTTCCTGGACAAACTGAGAAAAAAGCCCATGAGTTCCCTCCATTGTTGCTGGGAAATTCCAACTACATAAGGGAATAGTTAGCCCAGCCCCACCCGCCCCTGCCATAAACTCCCAAGACAGTCCTTTCCTTGCTCACTCTAGCCCCATCTGGACCTGCTTGGAGCTGTCCCCAGAAAGCCTCATTATGTGAGTAACAAATCTTTTTACACCCTCTTATTGTGTGTGTCTCATCGTCACTCTTGACATCTGAACCAAGTTTGGGGTGGGGTCCATTTCTCCTTGCAGGTCATTTACAGCTGGGGCAATAAGCAGGATGTCAAGGCAATGACCACCCCCACAGGGGTCTTTCTCCTCTTCCCAACTGGTTATACTGCCTGCTGGCAAGTATGCACTTTGCCTCTGTCCTATACATAACTAACCTACATTAGAAGTTATCATGGACATTTAGAGGCAGGTGTAAGGGCTTTGGGCCCTCCTTAAAGTTGCCCAGGTCCATGTGTCTCAGCCCAGCATAATCTGTGTCTTAGATTATGTGTCTCAGCTGCAGCATAAGCTCTGAGTGATAATTGGCTCATGGGAACAACTTTTACTCTGTGACTGTTATTTGTGTGTCTCAGTCAGGCATTGGCCCTATTGTATACAGCACTCAGGGGAAAGACCAATACTGTTTGCATTTAAGGGTCTGGCTGTTTGTGTGAAGGAAGACAAGATACAATGTAGCATGTAAAAGCAGGTGGCTTGCCTTTCAAAATGTTGTCATCTTCTCTTGGAGTTTTTTTACTTTTCCCTCTAATCCATCTTCTCAGATAATTCATTCTGCTTTTCTACTTATTTTTCTCATTTACAAAAGCCTCTTTCTTACCTCCCAGTCATATCACCTACAACCATGTCTGTGTTTTCTCATGCCTAGATTATTCTAATCCTATTTGTATGTGATAATCCCATTCTTTCTTTTTCACTATTTCATCTCAGATGCTGCTGATAGATTTCACTACTTAAAACATTGTGTGCTGTGTTTATCCTGTCATAGCTACATGGAAGAAAACTAAAGTTACTACTTAATATCTAACATGTGACAGATTCTCCTCTCAGTAGGTTTGTAAGCTAGAGAAAGAATATGGCCTCATATTTGCAATTCACATTTGTCCCTGTTTTCTATAACCATTTCTATCCTATTTTAAGATTTTCTTTAATTCTCCCTTTTCATCGAGCCCTTTGATTATTATGTTATCTATCTGCGTATTCAAATAATACACATATTTTGGCTGGGCACAGTGGCTCACGCCTGTAATCCCACCACTTTGGGAGGCTGAGGTGGGTGGATTACCTGAGGTCAGGAGTTTGAGACTAGCCTGGCCAACATGGCGAAACCCCATCTCTACTAAAAGTATGAAAATTAGCCAGGCGAGGTGGCAGGGGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGATCCCAGGAGGTGGAGGTTGCAGTGAGCTGAGACCGCGCCACTGTACTCCAGCCTGGGTGACAAGAACGACACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTAGGCTGAGGCAGGTGGATCACAAGGTCAATTAGCCAGGCATAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCAACAAAGTGAGACTCTATCTCAGAAAACAAAAACAAAAACAAAAACAAACAAAAAACCAAATAATACACATATTTTGTGCTCAGCTTTCACTTACTCCTTGAATTTGACCTATTGCAGCATACAACCTCCAGAAATTCAGAGAAACCTACATTAAATTACATGATAACTGAGGCTTTTACTCTTGTACATTAAAATGCAAAGTTTCTGTAGAAAATAGTGAAATTAAATTCCTGAATTTGTGTTATAAGCAGAGGAGGTCGTTTTGCTCTATTTCAGAAAGATTTTAAAATTTTTCTTTTAGGAGCAATTCAAAGGGCTAGAAAAACTAATTGGAAAGAGGATAACTGCATGAAATCTTGAAAATTTCAGTCTTTGTGCATTACACTTTTGTTAACGTGCACATCTATGCCAATTCAAATATAAATATGAGTGGTTCAGAGTACCTTTTTGTTGTTTGTTTTTAAGTTAAAAGAGAGCCTCTCTAGAGTTGTGGTGAAATTTGAAATTAGCTTTTAAAGCAGAGAACCCCAAATGATTAATGAAGAACAATGAATTTTTGATAGAAACAAAAGATCAGAAAAAGGAAGCTTAAATGGAGAAAATGAAAAGACTGTATGTTTGGGTTCATTGATAAAATAGACTGCAGTGACTAATGGAAAGATGTGTGTTAGTCCCTTTTCGATGGCCATAACACCGGGCAACTCTGTTTCCATGGCCGTTCAGGGACAAAGTTTCTAGAAAGTCATTGTACCACCATCCCCTAGGGCAAGGGCTGACAAATTTTTTGTAAAGGCACAAAAGTAAATAGGCTTTGTGGACCATATGGCTACTGTCACAACTGCTTATTTCTGCAGTTGTAGCCCCAAAGCAGCTATAGACAATACATCAATGTATGGGTGTGGCTGTGTTCCAATAAAAACTTTATGGACACTGAAATTTGAATTTCATATAATTTTCATATGTCGTGAAGTAGTATTCTTCTTTTAATTTTTTGACCATTTAAAAATGTAAAATACATTGTTAGCTTTTGGATAGAGGCCTGGATTTGGCCCAAGGGCTTCAGTTTTCTGACCCCTGCCCTAGGGCATTGCCAGCTTCATAGAACTGGGTGCTGCCAAGTTGGAATATACTGGTGGGAAAAGAAGAGGTTTGTAGGAGACAAACCCACTTTCTTAAGACATTGGCCTTATCACTTCCACTGATGAGTGAAAAAGAGTTACTCAGTGCCACCTAGTGACAAATGAAGCTGAACAAACCTAGTGTTGTGAAGCAGCCATGTGCTTGGCTACAAGCTTAATATTGTGAAGGAAGGGCACAGGTTTGATGAACAACTTTCAGTCTTCTCTTCTGATGTCTAGTTCTTTCCTGTTATGTCTTCTACCAGATGCATTTATCACATCAGTACCCCAAACCAGGGATGAAGAATTGAACCATAGGCCAGACACGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTTGTATTTTTACAAATACATGTATGGCGGCACATGTCTGTAGTCCCACCTGCTCATGTGGCTAAGGCAGGAGAATTGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCATTGCACTCCAGCCACTCCAGCCTGGGTGATAGAGTGAGGCTCCATCTCAAAAGAAAATAGACCAATTGTTACATAGAGTTGATTCAAGGAAAACACAGATAAATGAGAGAGGCTATATAAATATAACAAATGTATATAAATTTTTCTGTTTGGCCAAGTTAGGATGACTAAGATATCGTAATTTTACTGTAAACATAAATACATTGGTATTTAGGGCACAGTGGATCATAGGGAGAAGAGAAAACAGGAAGATTGTGAGGATTTACAGATTAAGGAAAAGAATCTAGACTCAGAAATACTTCTTTTCACAGAGTTTATCACTTTGTTCTTCTGACACCTCACTCACCATGTAGTTCTACTACATTTGCACTGAATTGCAATCTCTTCTTCCCCAATTACTAAACATTTGATTTGGGCAAATTTAACTAAACTCTTCTGTGGCTCAGTTTCCTCATCTGTAAACTAGAAACAATAATAATACCAACAGCAAAGGGTTACAATAAAGTGCTTTTTGTTTTTGTTTTTAAGAGACAGGGTCTTGGCTGGGCTTGCTGGCTTACGCCTGTAATCCCAACATTTTGGGAGGCCGAGGCGGACAGATACTTGAAGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAATCCCCGTCTCTACTAAAAATACAAAAATTAGCCAGTTGTGGTGGCATATGCCTGTAGTTCCAGCCACTCATGAGGCTGAGGCACAAGAATCCCTTGAACTCAGGAGGTGGAGGTTGCAGTGAGCTCTGATCATGCCATTACACTCTAGCCTGAGCAACAGAGTGAGACCCTGTCTTAAAAAAGAAAAAAAAAAAAGAGAGAGAGAGAGACAGAGTCTCACTCTGTCACCCAGGCTGGAGTGTAATGGTGCGATCAGAGCTCACTGCAGCTTCAAACACCTGGGCTCAAGTGATCCTCCTGCTTCAGCCTCCTAAGTAGCTGGGACTATAGGCATGTGCCACTAGGCCCAGCTAATTGTTTTTTCATTTTTCTGTAGAGATGGGGGTCTCACTATGTTTCCCAGGCTGGTCTCAAACTCCTGGGCTCAAGCAATCCTCTCATCTCAGCCTCCCACAGTGCTGGGATTACAGGCATGAACCACCACACCGGGCCGTGATAAAGTTTAAGTGAATTAATATAGAACTTAGAACAGCACATCTAAATGATATTGTTTATCATGTTATAAATGTTAGTATTAATATTATTACTCTACATCATTGTATTACATATTATATATAAATGAGTTATTATACCTATATATTTATGTATATTTAAAATACTTATGTACATTTGTTATATTTATATAGTCTCTCTCATATCTCTGTGTCTGCCTTGAATCAACTCTTTTTTTTTTGGAGATAGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCAAGATCTCGGCTCACCGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTAGGATTACAGGCATGCACCACCATGTCCGGCTAATTTTGTATTTTTAGTAGAGATGAGGTTTCTCCATGTTGGCCAGGCTGGTCTTCAACTCCTGACCTCAGGTGATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGCTTACAGGCGTGAGCCACCACACCCGGCCTGAATCAAAGGTCTATTGTATTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTGGAGACAGAGTCTTGCTCTGTCACCCAGACTAGAGTGCAATGGCGCAATTTCAGCTCACTGCAACCTCTGCCTTCAAGCCATCAAGCCATTCTCTTGCCTCAGCCACTTGAGTAGCTGGAATTACAGGCATGTACCACCACGCCTGGCTAATTTTTAGTAGAGACAATATTTTGAGTGTTTTTTAGCAGAGACAGAGTTTTGCTATGCTGGCCAGGCTGGTCTCAAACTCCTGGCCTCAAGTGATCTGCCCACCTCAGCCTCCCAAAGTGCTAGGATTACAGGCATGAGCCACCGCACCTGGCCTTATTTTCTGTTAATTGTTCTTTTTGTCAGTCTTATCTTTTCTTTCTTTTTTAG
Seq C2 exon
ATGGGGACATTGGTTTTGGACCTTTACAACAGAGGATGTCTGAAGAAGTTTCTTTCCAGTCTGAGATTAATATTAATCTCTTCACAAGAGATGACCCATATTCCATTTTAGAAGAATTGTGGAAAGACGATGAACACACAAGAAAATGTGGAGAAAACCAGAACAAACCTTTAAGTCGTGTTGTCTTCATTAACAAGAAAACACTAGCTAATGACAGCATCTTTGAATATAAGGACATTGGGGAAATAGTTCATGTAAACACACACCTGGTTTCCTCAAGAAAAAGACCCCATAACTGTAACTCGTGTGGAAAGAATTTGGAGCCTATCATAACCTTATATAATAGAAACAATGCAACAGAAAATTCTGATAAGACTATTGGAGATGGTGATATTTTCACTCATTTGAATTCTCATACAGAAGTGACTGCTTGTGAATGTAACCAATGTGGGAAACCTCTGCATCATAAGCAAGCTCTCATTCAACAACAGAAAATTCATACTAGAGAGAGCCTCTATTTGTTTTCTGACTACGTAAATGTTTTCTCCCCGAAGTCACATGCCTTTGCACATGAGAGTATTTGTGCTGAAGAAAAGCAGCATGAATGCCATGAATGTGAGGCAGTCTTCACTCAGAAGTCCCAGCTTGATGGCAGTCAGAGGGTTTATGCAGGAATATGCACTGAATATGAGAAGGATTTTTCCCTCAAGTCAAACCGTCAGAAAACTCCTTATGAGGGGAATTACTATAAATGCAGTGACTATGGAAGAGCCTTTATCCAGAAGTCAGATCTGTTCAGATGCCAGAGAATTCATTCTGGAGAAAAACCTTATGAGTACAGTGAATGTGAGAAAAACCTCCCTCAGAATTCAAACCTTAATATACATAAAAAAATTCATACTGGAGGGAAACACTTTGAATGTACTGAATGTGGAAAAGCTTTCACAAGGAAATCAACACTAAGTATGCATCAGAAAATCCATACAGGAGAAAAACCTTATGTATGTACTGAATGTGGGAAGGCCTTTATCCGGAAGTCACATTTTATCACACATGAAAGAATTCATACTGGAGAAAAACCCTATGAATGCAGTGACTGTGGGAAATCCTTTATTAAAAAATCACAACTCCATGTGCATCAGCGAATTCACACAGGAGAGAATCCCTTTATATGTTCAGAATGTGGGAAGGTCTTCACTCACAAGACAAATCTCATTATACACCAGAAAATTCATACAGGAGAAAGACCCTATATATGTACTGTGTGTGGTAAGGCCTTTACTGACAGGTCAAATCTCATTAAGCACCAAAAAATTCATACTGGAGAGAAACCTTATAAATGCAGCGACTGTGGAAAATCATTCACCTGGAAGTCTCGGCTCAGGATACATCAGAAGTGTCATACTGGAGAGAGACATTATGAATGCAGTGAATGTGGGAAAGCATTCATTCAGAAGTCAACATTAAGTATGCACCAGAGAATTCATAGAGGGGAAAAACCATATGTTTGCACTGAATGTGGTAAGGCCTTCTTCCACAAATCCCATTTTATTACACATGAGAGAATTCATACTGGAGAGAAACCCTATGAATGCAGTATTTGTGGGAAATCCTTCACTAAGAAATCACAGCTCCACGTACATCAGCAGATTCACACAGGAGAGAAACCCTATAGGTGTGCTGAATGTGGAAAGGCTTTTACTGACAGATCAAATCTCTTTACACACCAGAAAATTCACACTGGAGAGAAACCTTATAAATGTAGTGACTGTGGGAAAGCCTTCACTAGGAAGTCAGGTCTCCATATACATCAGCAATCCCATACTGGAGAAAGGCATTATGAGTGCAGTGAATGTGGGAAAGCCTTTGCAAGAAAATCAACACTAATTATGCATCAGAGAATTCATACAGGAGAGAAACCCTATATTTGTAATGAATGTGGGAAATCCTTCATCCAGAAGTCACACTTAAATAGACACAGGAGAATTCATACTGGAGAGAAACCCTATGAATGCAGTGACTGTGGCAAGTCTTTCATTAAGAAATCACAACTCCATGAGCATCATCGAATTCACACAGGAGAGAAACCATATATATGTGCTGAGTGTGGAAAGGCCTTCACCATCAGATCAAATCTTATTAAACACCAGAAAATTCATACTAAACAGAAACCCTATAAGTGCAGTGACTTGGGGAAAGCCTTAAACTGGAAGCCACAACTCAGTATGCCTCAGAAATCTGACAATGGGGAAGTAGAGTGCTCCATGCCACAATTATGGTGTGGGGACTCAGAAGGTGACCAAGGCCAACTTTCTTCTATCTAGTTAGAATTATGAACATCTGGATCATATAGCTGATGTGTAGTTACACATATGGGGAGACACTTTTGAGAGTGTTTAAGCAATGTATAGTGGCCATCTTTGGTTACTTGATATTGGTGTTGTCAAGCTCCTGCAAATAATAGTAAATGTGCAAGGAGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127081:ENST00000375495:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=NA C2=0.058
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=2.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains