HsaEX0073779 @ hg19
Exon Skipping
Gene
ENSG00000198298 | ZNF485
Description
zinc finger protein 485 [Source:HGNC Symbol;Acc:23440]
Coordinates
chr10:44102445-44104798:+
Coord C1 exon
chr10:44102445-44102522
Coord A exon
chr10:44104062-44104188
Coord C2 exon
chr10:44104703-44104798
Length
127 bp
Sequences
Splice sites
3' ss Seq
AATTGGGTTTGGTTTTGCAGGGA
3' ss Score
6.95
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
ATTGACTTACGCAGGATTCTCAGCCCTTGCCTGGGAGAACAGTTCAGGAGACAGATGGCCCCAAGAGCCCAGATCCAG
Seq A exon
GGACCGCTGACATTTGGGGATGTGGCTGTGGCCTTTACCCGGATTGAGTGGAGACACCTGGATGCTGCTCAGCGGGCCCTGTACAGGGATGTGATGCTGGAGAACTATGGGAATCTGGTGTCTGTGG
Seq C2 exon
GGCTTCTCTCTTCCAAACCAAAACTAATTACTCAGTTGGAGCAAGGGGCAGAGCCCTGGACTGAGGTGCGAGAGGCTCCATCAGGCACACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198298_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.303
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACTTACGCAGGATTCTCAGC
R:
CATGTGTGCCTGATGGAGCC
Band lengths:
170-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)