HsaINT0187383 @ hg19
Intron Retention
Gene
ENSG00000198298 | ZNF485
Description
zinc finger protein 485 [Source:HGNC Symbol;Acc:23440]
Coordinates
chr10:44102445-44104188:+
Coord C1 exon
chr10:44102445-44102522
Coord A exon
chr10:44102523-44104061
Coord C2 exon
chr10:44104062-44104188
Length
1539 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
AATTGGGTTTGGTTTTGCAGGGA
3' ss Score
6.95
Exon sequences
Seq C1 exon
ATTGACTTACGCAGGATTCTCAGCCCTTGCCTGGGAGAACAGTTCAGGAGACAGATGGCCCCAAGAGCCCAGATCCAG
Seq A exon
GCAAGTTTGATTTTTCCATTTCTTGAGAAACCACGTGTTTCAGCGAGGTGGGGTTTATGCCTCTTGCCCGGACAATGCCCTGCCCTGTGTGTGGACAAAGCTACCCGAACCAATCCTGGATGGGTCCCGCGATTTCCGTCCTGTCTACCCATTACGTAGTCATTCACCAAGTAGATTATTGCTACCCATGTTTTCTAGAGTGCTAGAAACAGAAAAGTGCTTTGCAAACTGGCAGACGATGAAAAAAATACACGTTAGCATGTAAAGACGTAGGCCATAAAGACATAGGGTGATAGCAGTGCTCTCTTGACCTTTAGTGTGTGGTAGGGTGGGAGGGGTGGAGTAGTGGGCGCCTTAGTTCTTCCTGAAGAATAAATGAGATTTGCATAATTGCAGAGGATACTAGGGGAAAGCGCTGCCTGAATGAAGTCATTATGGCGGGACCATGAACAAACTGGTCTGAGAAAGTTGGAAACATTCATGGTCTAGAATCCCAGACTGGAGTTTGCTTTTATCCTGGAGAAAACTAGGTTTTGAAGGATTTTGAGAAGCTGATTAAATAATTGGTATTTTGAAAGGAAGTGATAAACATTTGAGTGTCTATTATACAAATAAAATTAAAAAAATTAAAGATCACCTACATTTCTACTGCTCTAAGTCAAGTAATTTCATTTGAAACACACTTTTCATTTTTTTAAGGCTTACTCATTTTTTCTTTTAGTATTTCATAGCCATTCCAATTTGTTCTAGTTTCATTACCACTTTTTGTGGCTTCCTTTTATACTGTGCCTTCAACCAGCCCTGGGACCTTGAGCAAGTTCTTCCAACTCTCTGAACCTTTGTGTCTTTAGCTACGAAATAGATTTTACTTTATATAGTTACGGCAGAAATTTAGAGAGATGATATGTATCTCAGGGTTTAGCACCGTGGCTGGTACATAGTAAGTTGTTACTCTTATGAAAAGCAATTTTTTTTTCTTTTTTAAAAATATTCTGCCCCAGAGTCAGATCATACTCCCTGTAAATTCTCGGATAAAGCTAATCACTTTCCATGTCTTTTCAAAGTTTCTATTCATTTGTTGATTGAATAAAGCTTGAACACTTCTGTGTCAGGCAGTGTTTTTGACTGGGAGGCAGCAGTGACCCACACTGTCCCCCTGGAGCTCACATTAGAGAGGATGCTGACAGTCAGTGCAAACCTCTCCTGCCAGGTGGTGAGAAATCCTGTGAAGAAAAGTGAAATGGGTTTCGAGACTGAGTGGCAGAGGATGGGGTGGAGAAATAGAAGACCTTTTTGATGAGGTGACATGAAGGGTGGAGTGAGCAGAGGCTAGGCCTGGAGGAGGGAGCAGGACAGGCATGCAGGAAGAACCTGCTCAAGGGAGGAGTCGCACATCCCCTGAGCCCTCAGCTTTTACTTGTTGGTTTCCATGAGCACTGTTGGAACTGTCAGAAGCTGGCTTTGACCACCTTGCTTCCTTCTCTTGGGATGCCTCCCTCAGGGGTTCCCGGATGAGCAGAATTGGGTTTGGTTTTGCAG
Seq C2 exon
GGACCGCTGACATTTGGGGATGTGGCTGTGGCCTTTACCCGGATTGAGTGGAGACACCTGGATGCTGCTCAGCGGGCCCTGTACAGGGATGTGATGCTGGAGAACTATGGGAATCTGGTGTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198298-ZNF485:NM_145312:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACGCAGGATTCTCAGCCC
R:
CCACAGACACCAGATTCCCAT
Band lengths:
200-1739
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)