HsaEX0073789 @ hg19
Exon Skipping
Gene
ENSG00000162714 | ZNF496
Description
zinc finger protein 496 [Source:HGNC Symbol;Acc:23713]
Coordinates
chr1:247471777-247473108:-
Coord C1 exon
chr1:247473001-247473108
Coord A exon
chr1:247472741-247472805
Coord C2 exon
chr1:247471777-247471890
Length
65 bp
Sequences
Splice sites
3' ss Seq
GAGGATCTTAATTTTGCCAGGCA
3' ss Score
2.32
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
ACGACCTAGCTGCCCAGCCAGATCTCTCCCAGGGAGAGGAGAATGAGCCACGCGTTCCAGAGTTGCAGGATCTCCAGGGCAAAGAAGTGCCCCAGGTCTCCTACTTGG
Seq A exon
GCATTGGAATTGTACTCCCTTGGCCAAGGACTGGGAAATAATAGGAATGTCTTTCTCCTCTGCCT
Seq C2 exon
ACTCTCCAAGTCTCCAGCCATTCCAGGTAGAAGAAAGAAGGAAACGTGAGGAGCTGCAGGTGCCAGAGTTCCAGGCCTGCCCACAGACGGTGGTGCCTCAAAACACCTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162714-'12-19,'12-18,13-19
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.845 A=0.000 C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGAGGAGAATGAGCCAC
R:
GTTTTGAGGCACCACCGTCTG
Band lengths:
182-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)