HsaEX0073789 @ hg38
Exon Skipping
Gene
ENSG00000162714 | ZNF496
Description
zinc finger protein 496 [Source:HGNC Symbol;Acc:HGNC:23713]
Coordinates
chr1:247308475-247309806:-
Coord C1 exon
chr1:247309699-247309806
Coord A exon
chr1:247309439-247309531
Coord C2 exon
chr1:247308475-247308588
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTGTCCCTGACTTTTCATAGAAA
3' ss Score
6.65
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
ACGACCTAGCTGCCCAGCCAGATCTCTCCCAGGGAGAGGAGAATGAGCCACGCGTTCCAGAGTTGCAGGATCTCCAGGGCAAAGAAGTGCCCCAGGTCTCCTACTTGG
Seq A exon
AAAGAATGGAGGATCTTAATTTTGCCAGGCATTGGAATTGTACTCCCTTGGCCAAGGACTGGGAAATAATAGGAATGTCTTTCTCCTCTGCCT
Seq C2 exon
ACTCTCCAAGTCTCCAGCCATTCCAGGTAGAAGAAAGAAGGAAACGTGAGGAGCTGCAGGTGCCAGAGTTCCAGGCCTGCCCACAGACGGTGGTGCCTCAAAACACCTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162714_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.872 A=0.000 C2=0.769
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000294753fB8162
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGAGGAGAATGAGCCAC
R:
GTTTTGAGGCACCACCGTCTG
Band lengths:
182-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development