HsaINT0187413 @ hg38
Intron Retention
Gene
ENSG00000162714 | ZNF496
Description
zinc finger protein 496 [Source:HGNC Symbol;Acc:HGNC:23713]
Coordinates
chr1:247308475-247309806:-
Coord C1 exon
chr1:247309699-247309806
Coord A exon
chr1:247308589-247309698
Coord C2 exon
chr1:247308475-247308588
Length
1110 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CCATTTCCTCCTCTGGAAAGACT
3' ss Score
3.23
Exon sequences
Seq C1 exon
ACGACCTAGCTGCCCAGCCAGATCTCTCCCAGGGAGAGGAGAATGAGCCACGCGTTCCAGAGTTGCAGGATCTCCAGGGCAAAGAAGTGCCCCAGGTCTCCTACTTGG
Seq A exon
GTGAGTAATGATTCCAGAACTGAGTGGACAGAGTAGGGGGAAGGGTTGCTGGCAGCCGGAGGTGAGCCCACTCTCTGGCTTCTCTCTGCGGCCCCTAATTGCCTTCTTCATTTCCCCAGACTCTATGTGGGTCTTGCATGTCTTGCCTTGTCCCTGACTTTTCATAGAAAGAATGGAGGATCTTAATTTTGCCAGGCATTGGAATTGTACTCCCTTGGCCAAGGACTGGGAAATAATAGGAATGTCTTTCTCCTCTGCCTGTAAGTAACATCTGGTTTGTGCTGACAATGCAGCAGCCCCTCCAGGAGTGAAGTCAGATACTCATGACAAGCCTAGTTGCAGAGGGAGTGTCTCCTAACTGGGCACCGAGCGCAGCCCTTTGAGGTGCCTCACCTGTCTAGTCTTCCCATCTGCCTGGTACAGGGGTGCTGTGAGGACACTGGGGTGTGGGGAGGTGCTGGGGCTCAGCAGCAGCAGTTTCCAGCCCTCCTTCAGGCTGTGTCGCCAGCACTTGCACCCATGATCTCCATGCCATGGTGCTTCGAAGCATCTGCTCCTTCAGGAGGAAATAGCTTTGTACAGAATCATCAGCAGCTCCACACCTTCTTCCCCTTTGGGACCTAGAGCTGGCATGAAGCAGACAAGGTTTTGACACACCATCCCCACCTGGAACAAGCGTTCAGAGACTTGGTGTGGTGCAGTAGCTCCTGTACCATCTCTACCCTGTAGGCTCTGCACAAGCTGTTTGTGCAGGATGTGCGGAGTGTGCAGGAGCCTGTGGTGATGACTATAGAAAACCCACCACAGAAAGTGGGAATAAATATGGGGCTGGGGGAAGTGCTTGTCTCTGGCCATAGAGTGGGTGGAGTAGAACCCGGATCTACGTCGATTCTGTCTAGCGTCAGAGCTCATGTTTGTGGAGTTGGCCCATTTTGCCTTCAGGTTCATTCACTCAGCAGACACTTATTGAGTGGCCACCCCCTGCCAGTCCCCAGGACGGAGCCCAGGGCCGCCCCCAGATCGTAGCCTGGCATCTATTCGGATAGCACCCTCCCAGGTAGTGCTGTAGGTGCAAAACAAATCAATTTTTCCATTTCCTCCTCTGGAAAG
Seq C2 exon
ACTCTCCAAGTCTCCAGCCATTCCAGGTAGAAGAAAGAAGGAAACGTGAGGAGCTGCAGGTGCCAGAGTTCCAGGCCTGCCCACAGACGGTGGTGCCTCAAAACACCTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162714:ENST00000294753:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.872 A=NA C2=0.769
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAGATCTCTCCCAGGG
R:
TGGGTAGGTGTTTTGAGGCAC
Band lengths:
207-1317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains