HsaINT0187413 @ hg19
Intron Retention
Gene
ENSG00000162714 | ZNF496
Description
zinc finger protein 496 [Source:HGNC Symbol;Acc:23713]
Coordinates
chr1:247471777-247473108:-
Coord C1 exon
chr1:247473001-247473108
Coord A exon
chr1:247471891-247473000
Coord C2 exon
chr1:247471777-247471890
Length
1110 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CCATTTCCTCCTCTGGAAAGACT
3' ss Score
3.23
Exon sequences
Seq C1 exon
ACGACCTAGCTGCCCAGCCAGATCTCTCCCAGGGAGAGGAGAATGAGCCACGCGTTCCAGAGTTGCAGGATCTCCAGGGCAAAGAAGTGCCCCAGGTCTCCTACTTGG
Seq A exon
GTGAGTAATGATTCCAGAACTGAGTGGACAGAGTAGGGGGAAGGGTTGCTGGCAGCCGGAGGTGAGCCCACTCTCTGGCTTCTCTCTGCGGCCCCTAATTGCCTTCTTCATTTCCCCAGACTCTATGTGGGTCTTGCATGTCTTGCCTTGTCCCTGACTTTTCATAGAAAGAATGGAGGATCTTAATTTTGCCAGGCATTGGAATTGTACTCCCTTGGCCAAGGACTGGGAAATAATAGGAATGTCTTTCTCCTCTGCCTGTAAGTAACATCTGGTTTGTGCTGACAATGCAGCAGCCCCTCCAGGAGTGAAGTCAGATACTCATGACAAGCCTAGTTGCAGAGGGAGTGTCTCCTAACTGGGCACCGAGCGCAGCCCTTTGAGGTGCCTCACCTGTCTAGTCTTCCCATCTGCCTGGTACAGGGGTGCTGTGAGGACACTGGGGTGTGGGGAGGTGCTGGGGCTCAGCAGCAGCAGTTTCCAGCCCTCCTTCAGGCTGTGTCGCCAGCACTTGCACCCATGATCTCCATGCCATGGTGCTTCGAAGCATCTGCTCCTTCAGGAGGAAATAGCTTTGTACAGAATCATCAGCAGCTCCACACCTTCTTCCCCTTTGGGACCTAGAGCTGGCATGAAGCAGACAAGGTTTTGACACACCATCCCCACCTGGAACAAGCGTTCAGAGACTTGGTGTGGTGCAGTAGCTCCTGTACCATCTCTACCCTGTAGGCTCTGCACAAGCTGTTTGTGCAGGATGTGCGGAGTGTGCAGGAGCCTGTGGTGATGACTATAGAAAACCCACCACAGAAAGTGGGAATAAATATGGGGCTGGGGGAAGTGCTTGTCTCTGGCCATAGAGTGGGTGGAGTAGAACCCGGATCTACGTCGATTCTGTCTAGCGTCAGAGCTCATGTTTGTGGAGTTGGCCCATTTTGCCTTCAGGTTCATTCACTCAGCAGACACTTATTGAGTGGCCACCCCCTGCCAGTCCCCAGGACGGAGCCCAGGGCCGCCCCCAGATCGTAGCCTGGCATCTATTCGGATAGCACCCTCCCAGGTAGTGCTGTAGGTGCAAAACAAATCAATTTTTCCATTTCCTCCTCTGGAAAG
Seq C2 exon
ACTCTCCAAGTCTCCAGCCATTCCAGGTAGAAGAAAGAAGGAAACGTGAGGAGCTGCAGGTGCCAGAGTTCCAGGCCTGCCCACAGACGGTGGTGCCTCAAAACACCTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162714-ZNF496:NM_032752:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.845 A=NA C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAGATCTCTCCCAGGG
R:
TGGGTAGGTGTTTTGAGGCAC
Band lengths:
207-1317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)