RnoINT0168287 @ rn6
Intron Retention
Gene
ENSRNOG00000003129 | Zfp496
Description
zinc finger protein 496 [Source:RGD Symbol;Acc:1304611]
Coordinates
chr10:45838662-45839734:-
Coord C1 exon
chr10:45839627-45839734
Coord A exon
chr10:45838767-45839626
Coord C2 exon
chr10:45838662-45838766
Length
860 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TTTCCGTTCTCTTTGGAAAGACC
3' ss Score
4.43
Exon sequences
Seq C1 exon
ATGAGTCTCCAGTTCAGCTGGGCCACTCACATGAGGAGGAGAACGGGTTGCGGGTCACAGAGTGGACAGACCTCCAGGATAAAGAAGCACCCCAAGCCTCCTGTATAG
Seq A exon
GTGAGTGACAATTAGAGGTGGGTGGACAGCAAGGTAGAAAACTATTGCATCCAGAGCACCCCCAGTATTCCTCCATAGCTCCCCACTCCTGGAATTCCATGCCTTGCCTTGACTCTGGCTTCTTGTGGAGACTGAGGAGGCTACATTTTGCTGTCCATTGAGACTGTTCCTCAACCAGGGACTTGTAGTGAGAGGATGTCTTCTGCTATCCAGAGTAGCCTTATGTTTAGAATAAGATCCTTTCTAGAAAAATGGTCAGATGTGTATGGCTAAGGACTGGGCATGAAGCACAACCCTTTTAGACACTGTGCTTACCGGCTTCCCACCCACTGACTCACACAAGCGCTCAGAGAATTCTACGGGGAAAGATGGGCCAAAATTCATTGCACCATGTCTGTGTATGCGTGCATGCAACCTGAGCTATGAAGGAAGTAGCCTTGAACAGAATCAGCAGCATCCCTGGACCTCCATCCTCTCTGCCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCGGGGGCTGTGCTGTGAAGGGACCTCCATTCCCTCTGACCCCTCCCGTCTGTCCTGTGGGCTCAGTACAGTCTGTTTGTGGAAGGTTTGCGCAGGCCTACCTTGGAAGGTGTTAACCGTCTGTGGTAGACCTAGAACCCACATTAATTGAGCCCAGCTTCAGAACCTTGGTTCATGGTGTTTGCTCACTTGCCTTCAGGTTCATTCGCTCAGCAGAATGACCCCTCGTGCTCGCCCCCAGAGGGAGTGCAGCACCTGCAGATCATAGCCTGCCGCTTCCTTAGTGGTTTCTGAGTAGTGATATCTGTATGTATGTGACAAATCACTTTTTCCGTTCTCTTTGGAAAG
Seq C2 exon
ACCTCCAGCCATTCCAAGGAGAGGAAAGAAAGAAATGGGAGGAGCTGCAGGTGCCGGAGCCCCAATCCTGCCAGCAGGTGGTGCTACCTCCAAGTCCTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003129:ENSRNOT00000058308:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.833
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCAGCTGGGCCACTC
R:
AAGGACTTGGAGGTAGCACCA
Band lengths:
198-1058
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]