HsaEX0073808 @ hg19
Exon Skipping
Gene
ENSG00000168813 | ZNF507
Description
zinc finger protein 507 [Source:HGNC Symbol;Acc:23783]
Coordinates
chr19:32847522-32851524:+
Coord C1 exon
chr19:32847522-32847639
Coord A exon
chr19:32850411-32850561
Coord C2 exon
chr19:32851410-32851524
Length
151 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTCTGAATATAAAGCAG
3' ss Score
1.68
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
AGTCAATTGAGGAACCATGAGAGAGAACAGCACAGTCTTCCAGATACCTTGTCAATAGCAACTTCTAATGAGCCAAGAATTTCCAGTGATACAGCTGATGGAAAATGTGTCCAGGAAG
Seq A exon
CAGAGTGTGAATAGCCTGTGGACTGTATGCTGACAGACAAGTACATGAAGCGTTGAATATCTTCAAGAAATCGTTTTATATGATCAAGTCACTCAACTCGTGTTGACATAAGCTTACCCCAACTTGAATTACTCAGCCCTGTTGTTGCAGA
Seq C2 exon
GGAATAAGTCTTCAGTCCAGAAACAATATAGATGTGATGTGTGTGATTATACAAGTACAACATATGTTGGTGTCAGAAACCACAGGCGAATCCATAACTCTGATAAGCCGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168813-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.694 A=0.000 C2=0.145
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=PD(41.7=25.0)
A:
NO
C2:
PF134651=zf-H2C2_2=PU(57.7=38.5)
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAACCATGAGAGAGAACA
R:
CTGTACGGCTTATCAGAGTTATGGA
Band lengths:
226-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)