HsaEX0073808 @ hg38
Exon Skipping
Gene
ENSG00000168813 | ZNF507
Description
zinc finger protein 507 [Source:HGNC Symbol;Acc:HGNC:23783]
Coordinates
chr19:32356616-32360618:+
Coord C1 exon
chr19:32356616-32356733
Coord A exon
chr19:32359406-32359655
Coord C2 exon
chr19:32360504-32360618
Length
250 bp
Sequences
Splice sites
3' ss Seq
CTTTTATGCGGTGTATACAGGTG
3' ss Score
7.01
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
AGTCAATTGAGGAACCATGAGAGAGAACAGCACAGTCTTCCAGATACCTTGTCAATAGCAACTTCTAATGAGCCAAGAATTTCCAGTGATACAGCTGATGGAAAATGTGTCCAGGAAG
Seq A exon
GTGTTCTACCTAAGCTTTCTTCCTGCCAAGAGACACACAGTTCTTCCTGCTCTGCCTTTTTCATGAGCTTCCATGCTTGCTTTGTTTCTGAATATAAAGCAGAGTGTGAATAGCCTGTGGACTGTATGCTGACAGACAAGTACATGAAGCGTTGAATATCTTCAAGAAATCGTTTTATATGATCAAGTCACTCAACTCGTGTTGACATAAGCTTACCCCAACTTGAATTACTCAGCCCTGTTGTTGCAGA
Seq C2 exon
GGAATAAGTCTTCAGTCCAGAAACAATATAGATGTGATGTGTGTGATTATACAAGTACAACATATGTTGGTGTCAGAAACCACAGGCGAATCCATAACTCTGATAAGCCGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168813_MULTIEX1-2/4=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.685 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=PU(57.7=38.5)
Main Inclusion Isoform:
ENST00000544431fB8165
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAATTGAGGAACCATGAGAGA
R:
ACGGCTTATCAGAGTTATGGATTCG
Band lengths:
229-479
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development