HsaEX0073812 @ hg19
Exon Skipping
Gene
ENSG00000081386 | ZNF510
Description
zinc finger protein 510 [Source:HGNC Symbol;Acc:29161]
Coordinates
chr9:99525788-99538527:-
Coord C1 exon
chr9:99538282-99538527
Coord A exon
chr9:99537070-99537128
Coord C2 exon
chr9:99525788-99525914
Length
59 bp
Sequences
Splice sites
3' ss Seq
GACTCCTTCCTCACCCCCAGGTT
3' ss Score
9.91
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAAGGAGGGAGCCCCAGGAACAGGAGTCCCACCGAAGAACTGCTCTCTGACAGAACAGAGACCTCCTCACCAGGGCTTCCAAACAGATGCAGAAGAACCCAGAAAGGAGCAGGTCTTGATTTGCCCAACCAGCGGCACTTCTTCATCCCCTTGCCCAGAGAGCACCAGACTTGGTGATGTCGCCACATCCAGAAGCCATCACAGATTGTGTGACACTGAACACTGTGGGCCAACTTGCAGAAGGTG
Seq A exon
GTTATCCTTTACGGTTCTCCACACTCTTTCAGGAGCAGCAGAAAATGAACATATCTCAG
Seq C2 exon
GCATCAGTGTCATTCAAGGACGTGACTATAGAATTCACCCAGGAGGAGTGGCAGCAAATGGCCCCTGTTCAGAAGAATCTGTACAGAGATGTGATGCTGGAGAACTACAGCAACCTCGTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000081386_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAACACTGTGGGCCAACTT
R:
GGTTGCTGTAGTTCTCCAGCA
Band lengths:
146-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)