HsaEX0073858 @ hg19
Exon Skipping
Gene
ENSG00000203326 | ZNF525
Description
zinc finger protein 525 [Source:HGNC Symbol;Acc:29423]
Coordinates
chr19:53868946-53875549:+
Coord C1 exon
chr19:53868946-53869012
Coord A exon
chr19:53874472-53874594
Coord C2 exon
chr19:53875468-53875549
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTTAGACA
3' ss Score
10.86
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CCTTCCCCGCTCAGACGCGCGCAAACCCGGAAGCAGATCGCGTGGAGTGAAGGTCCCTCAGCGGCGC
Seq A exon
ACAGAGTCTCACTCTGTCGCACAGGCTGTGAGTGCAGTCTCATGATCTTGGCTCACTGCAACCTACGTCTCCTGGGCTCAAGCGATTCTTGTGTCTCAGCCTCCCAATTAGCTGAGATTACAG
Seq C2 exon
GATTGACATCTAAAGACTCTTGGTACATGAGGAAGAAACCCGGAAAAGGAAAGCAGAGGAGTCAGGGATGGCTCTTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203326-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.188
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCCCGCTCAGACGC
R:
AGGAAGAGCCATCCCTGACTC
Band lengths:
146-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)