HsaINT0187524 @ hg19
Intron Retention
Gene
ENSG00000203326 | ZNF525
Description
zinc finger protein 525 [Source:HGNC Symbol;Acc:29423]
Coordinates
chr19:53868968-53875649:+
Coord C1 exon
chr19:53868968-53869012
Coord A exon
chr19:53869013-53875594
Coord C2 exon
chr19:53875595-53875649
Length
6582 bp
Sequences
Splice sites
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
3' ss Seq
TTCTGTCTCCTTCCTTTCAGAAA
3' ss Score
11.54
Exon sequences
Seq C1 exon
AAACCCGGAAGCAGATCGCGTGGAGTGAAGGTCCCTCAGCGGCGC
Seq A exon
GTGAGTTTCGCTCCATCTTGTATGAAGTCTGCTCTTCCCAGGTCCCCGGCGCTTCTGTCCCTGGGACGTGGGGTCCCTACAGACCTGGAAATTCTCACCCGTCTTCCTTCGCCCAGAGCAAATTGAGACGTCCCCGTGAGAGCCCGGGGGTCACTTCCTTTTGGGTTTAAAGTCTCCCTGAGGCTGGTCCCGTTCCGGATCTTTCTGCTATAGGGCAATATATACACTTTCTATCGCGTAGTTTTCCTGCTCTAAACCTTTTTCTGACTCCTCCCGCCCCGCGCTTTTTAAAGTCCTCACCCGAGAGGTGAATTCCCGCCCTGGGCGCCTCCCAGCCTCGCCCTCGTCGGCCCCTAGAGCGCAGCGTCGCAGCTCCGGTCCCGGGGAGGCCGAGTTCTCTGCCTGTCCTGGGATCCTACAAACCCCACCCTTGTCTTAAGGCGCCGTCGCCCCCCACGTCCCTCCTCATGCCGGGCCCTGCTGCTCCCCAGGTCTCCCATCCGCAGTCACAGCTTGCCCTGAGCCTGCGTTAGGGGAGGTGCCCGGGTTCTGTCCTGTGACACGGGGTGTTCTTGCCTGCCCAGTTCCAGCCCCTGGAAAATAAGCTCCTCCGGGATGCAGGCGTCTTACTCCAAACCCTCCTGTGATTGTGTGGGCCAAAGGGATCGGGAGACAGACAGCAGTAGAAAACCTGAGACAGAGAAAAGAAGAATGAGAAAGGCCCATAACAGATGGCAAAGTAGAGGATGGGTGAGGGATTTGCCAAGAGACAGCAAAAGTGAAAAAAAAAAAAAAAAAGATAAGCAGGAGGAGAAAAGCAACTAGAGAAATGTAGAGAAAAGCTAGATGTACAGAGAGATGAAGGACAGCAAGGTAGGGAGAGGGACAGCAAAGAGGGAGGCTCATCAGGGTGAGGGAGAGGAGGAGGGATTTGGAGCCAGGGCAGACAGAGCAGAGTGGTGCTGGTGGCAAAGAGAACAGAGGGAGAACCACAGCAGGGAGGACACCTGGGGATCTGGGGTGCCAGAGAGTGGGGACAGGGGGTATAACAGAGAAGAGAGAATTTAACGGGGAGAGCAGAGGAGGCGCAGAGATGGTGTTGCGGGAAACTGAGGACTAGAGAGACTGATATGGGGGAGACAGGAGGATGTTTATTTAAGGTACACAGCGGCTCAGCAGATTTACATCTAAAAAGCTGAGCATTTCAACAAACACAGAGTGGGTTTTTTTTGCTTTCAGAAGCAGAGTAGAAGCAGTTAATCATATAATAGGTCACGTAATCTATAGCATAGCATAACTTGTGTCCTTCCATAGCTGGTGGCCTTGTAGCTGCATTGAAAGAAAAACAAGAACAGCTAAATACACACGTTTGTCCTTTTTTTTTCCTTCACCCTTGTTCTGGAGGTGGGGGTGTCAGGAGCTCATTCCTTTGGCTTCAACTTCTCAAACAGCGTCTCATAACTGTTCTTGAAGTGAGCTTGCTAGGCAGAGGAAAACTTCTTTTCTTTTTAACCCTTGCCTTGCCTGTTACTATTCTTGGAGTGAATGAATACATTTTTTTTTTTAAATTTCTGCTTCAGTTTCTTCCCTTAGATGCTTTTTATTATCAAGATTTTAATAGAAAGCATCACTATTACTGGATTCTTCATGAAAGAGCAGGTTTTCTTCTTTAGGCACAGGCTGATATTTATACAGAGCTATTAGCTGAGTGGTAGTCTGCCTGGTTACAATTGCTTCTATAGTTGATTAAATGTTCTTAACAAGGAGAGGTAAGAGGTAAGGGAGTATTAAACCAATTCTTAGTATTTCTAGAACTACTCCTATTAAGGTTTTGAATCGACTGAAGGAGGAAAACCAGCCTCTAAAGAGGGACTCGGGAGTCTACTTTGTCTAAGTCTGGACTGGAACATGGGATAATTTTTTCATACTTGCAGTTATTTCTATAACAGCCTTCCTGTTGTCATTGATTTCTAGGCAGCAATTAGTTAGATTAAACTTTCTACATACTCCTCCTTCCTAGGCTAGGAGGTAGTCTAAAGCTAATCTATTTTGGTAGATGGCATTTCTCATTTTCATGGCTTACTGGGCCAGTTTCATTAGTGATGATTTCAAGTACTGCTTGCAAATTTATGATGTGGTTAAGCGTGTAAATCGGGGTGCGATACCTTTATGACTTATCTCGTGCCCAGGTAGCTGGCCTAGAGTACAGAATTAGTCTTTCAGGGGGCCAGTCTGTATCTTTCTAATCTTCTATTTTTATGTCTTTTCTTATGTCTATATCTCTTTTGTTTTTTTTCTTTAATTTTGTTGTAGACAGGATACCTTAAAATTTCTCCTTGTTGCAATGGGAGTTAGAAGAAAGATGGTCTGATTGTTTCAAGTACACAAGCCCTTGTCCATTTGGCTGGCAACTGTCAGTAGGCCTGTGGCACACAGTTCTAATAGAGACCAGAGGGTGCTTGCCAGGTATTTGGAGCTTCAAGCTGATACTATGTGTGGTTTAGAGAAGAGAAACGGGAGAATGAGTTTGGATGAGGTGATCTGGAGTCATCTTTGCCTTGCCACAAAGTTTTCTTTAGTGTTTTATTATAATATTGCTGTCTTAAACAAGTTAATTCTTCTAGTGACTCTGTAAAAGCTTTTCCTTAGTGAGCAACACAGTATCTCCTGATAATAGAAGTTTTTAAGAGCTAGGGGCTTGAAACTGTGGGCATTGCTTTGGGGGAAGAGTCAGTTAGAGTTAAATTATCTTGTGGCATTAACGCTTTTGCTTCTTAAGGCCAGTGGTCTCCTATGTTAGTCCTTCTACAAACATAACATGAGGAAATGCTTAGGCTGCTAGCAATGTTTTCAGCTAGCCAAGCAAACAGGCTTTTAGCTAAAGGAGGAGGCTCTGGTAACTTCTGGTCTACCTGCTTGTAGAATAATTTAAAGATTTGGAATTGTTGCTGGGCCAGAAGGGTCGGGGTTCCTTTTTTGATAACATATAGGTAGGTTGCTGGGTAGGTGTGTGTGGAGACATGAATGGGGTAACCTGCGGTCCACACGGGTAAGTCTGGCTTTAGAATGGTGAAATTTACGGGATGACAGATTTTTGTTTCACAATCTGGTTTTACCGGCATTTTGGTAAGCATGATTGTCCTTTGTTGTGTGCTGGGGTGCCACGATATGCAATACTGAGAATCTTTTTCTGGGGTCTCAGAAGGACAAGGTGGCATGCATACGTATCTGTAGTCATTTCTATAGTATCTTTTTATAGGTAGGTTACCATAGACAGATGAGTCTAGGTCTGCTGATGACAAGCATCAAAATACAGAGAAATAGGCCCTCGGTAAAAGGGAAGGACCTTGGTTTGGTTTAAAAGGGAACTTTTTTTTGACCTTGCATGAATTTTAAACTATTCACCAGGTGAAAACTTGGAGTTATAAGATACATAAGGTTGGTTATTTTCTTGGTCACAAATTGAGTAGATTGTCTATGTACAAGTTCTTTTTTTTTTTGAGCTGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCACAATCTTGGCCCACTGCAACCTCCACCTCCCAGGTTCAAGTGATCCTCCTGCCTCAGCCTCTCAGGCACCCACCACCATGCCCAGCTAATTTTTTGTATTTTTAGTAGAGACGGGTTTCACCATGTTGGCCAGGTTGGTCTCAAACTCCTGAACTCAGGTGATCCACCTGCCTTAACCTCCTAAAGTACTGGGATTACAAGCATGATCCATTGTTCCCGGCCACCCATGTATTCTTGATGGAAACAATTTGCTTATGTCTTAGTTCTACAGCTGACCTTCTTTTCACTGTTTTTAAGGTCAATAGCTGTGGGTTCGCACTTCTGCATTTTATAAATGTTACTGTGATTTTCTTGTAAGGAAGAATTAAACGTCGGGAACCAAAGGCAACAGAACCTTGCAAAAGAAGTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTGGGCTCACTGCAAGCTCCACCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGACTACAGGCGCCCGCCACCACGCCCAGCTAATTTTTTGTATTTTTAGTAGAGGTGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCAAGAAGTTTCTTTAGCCCAGATATGTGAAAGATACCTCTCTAATTTTCAAGGATAGGGGTGATAAAGACCAACACTTCCATTAGCTCTTCCAGGCCCCCATGTAATAATTCAGGTAGCTGGGTGCGGTGGCCCACGCCTGTAATCCTAGCACTTTGGGAGGCTGAGGCGGGCAGATCAGGAGGTCAGGAGATCGAGATTATCCTGGCTAACTTGGTGAAACCCCTTCTCTACTAAAAATACAAAAAATTAGCCAGATGTTGGGTGGATGCCTGTAGTCCCAGCTACTCGAAAGGCTGAGGCAGGAGAATGGTGTGAACGTGGGAAGCGGAGTTTGCACCGAGATCCTGCCACTGCTCTCCAGCCTGGGAGACAGAGCGAGACTCCATGTCAAAAAAAAAAAAAAAAAAGAACAGGCACACCTTCTCACTCATCTCAGACCTTCTCAGGGTAACTTGGTGAAAATTTCCCTGCTCTGAGCCCAGTGAGCCTCCCTGCAACTTGGAGATGAGGGGCTAGACCAGAAAAGCTCAACCCGAGTGACCCTGGCCCCTTAAATGGTTGGCAAAATAGAATGCATGTCTGGGTGTGGCTTTTCTTCTGGGAGAGGGGAGTGCCCAGTTGTAATTAGAATTTTAAATGGGATGCAGTACCCCAAAAATGAAAAAAAAATAATAAAATGCAGAAGAATGGAAGAAACAGAGTTGCAGACTCAGACACAGAGACTATCTTCGGGGCCTTTCTCTGTATGAGGACATCACAGCCAAATCTAAAGCAGGTCACGTCAGTCCCTGGCAGGGAACCCTCCACCGGCTTCCCGTGTTCCCCAGGACAAAAGCCCAACTCCTCACTGTGGCTCCACAGCCCTGTGTCCAGGGCCCCTGCCAGTGTCCAGCCTCCTCCTGGGAGCTTGCCCTCATCTCATGACTCCCTTTGCCCCAGTCACATTTGCTTTTCGCTTTTCCCAAACATCAGAACCTTTCCTGTCTCAGGTCGTTGTCCCTGCTCTTAACCTATGTCCCTAAATGATGACAGCCCTGTCCCTTTCCTCTGCGTTCAGGTCTAGGCTCAGAGCTGTCTCCCATGCCCTCCACCCCATCTGAAGTTCCCTCTGCCCATCAGTCTCTATCACATGACTCAGGTTTTATTATCTCTGCATCAATCACATCAGAAACGCTTTTTTTTTTTTTTTTTTAGACAGAGTCTCACTCTGTCGCACAGGCTGTGAGTGCAGTCTCATGATCTTGGCTCACTGCAACCTACGTCTCCTGGGCTCAAGCGATTCTTGTGTCTCAGCCTCCCAATTAGCTGAGATTACAGGTGTGTGCCACCACACTCAGCTAATTATTGTATTTTTATTTTTAGTTTAGTTTTGAGTCTCATTCTGTCACCCAGGCTGGAGTGCAGTGACATGATCTCGGCTCACTGCAACCACCACCTCCAGGGTTCAAGCGATTCTCCTGCCTCAGTCTCCCGAGTAACTGGGATTACAGACACCTACCAAGCCCAGTTACTTTTTGTATTTTTAATAGAGACAAGGTTTCACCATGTTGACCATGCTGGTCTCAGACTTCTGACCTCAAGTAATCCACCCACCTTGGCCTTCCAGAGTGCTAGTATTACAGGCGTGAGCCACTGTGACTGGCTCAATTTTTGTATTTTTAGTAAAGGCAGGGTTTCACTATGTTGGCCAGGCTGGTCTCGAACTCCTGAGCTCAAGTGATTCTCCCACCTCAACCTCCTAAGTAGCTGGGAGCACAGACACACAGACATGCACCGCTATGCCTGGCTAAGTTTTTATATTTTTGGTAGAGATGGGGTTTCACCATGTTGCCTAGGCTGGTCTCAAACTCCTGAGCTCAAGCGATCTACCCCTCTCAGCCTCCCACAGTGCTGGGATGACAGCTGTGAGCCACTGCACCCAGCCTCTGTATGAAGTTTGGTCAGGTCTGGGTCGGTGCCCTGAAGAGCTCATTCCAGCCCAGCTCCCCACTGCTGCAGCGTGTGTGTAGGCTTCCCCAGGAGGGGAGTGGGAGTTTTCCTGTAGGAGTTTATTGTACCTGGTACCTGGTGTGGAGGGCAGTAGAGGGGACTGTATTTCATCAGGGTGAGGTCTCCTTTGTATGTGTCATTGTGTTACAGGGAGGGTGTGTGTTGATTCTGAGCAATAAACAACATATTTTTATCACTCAGGATTGACATCTAAAGACTCTTGGTACATGAGGAAGAAACCCGGAAAAGGAAAGCAGAGGAGTCAGGGATGGCTCTTCCTCAGGTGAGACGATATTCTCAGTGGATTGTTCTGTCTCCTTCCTTTCAG
Seq C2 exon
AAATGCTGACCTTGGAGTTGGGAATCTTCTAAGTCTGAAGCTTCCTGCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203326-ZNF525:NR_003699:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)