HsaEX0073927 @ hg19
Exon Skipping
Gene
ENSG00000167785 | ZNF558
Description
zinc finger protein 558 [Source:HGNC Symbol;Acc:26422]
Coordinates
chr19:8931856-8932767:-
Coord C1 exon
chr19:8932679-8932767
Coord A exon
chr19:8932118-8932311
Coord C2 exon
chr19:8931856-8931982
Length
194 bp
Sequences
Splice sites
3' ss Seq
GGGCCCATGATCCCCTGGAGATT
3' ss Score
-6.65
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CTCCGTCTTCCCTGTTCCCAGCCTCTCAGCAAAAAGGACACACACAGGGCGGAGAGCTGGTTAATGAGCTCCTGACAAGCTGGCTACGG
Seq A exon
ATTGAGGGAAATAAGATCACAGGAGCTCCCAGTCTGAGTGAGAAAAGGCAGCTGCTCTGTGGTACTGTGCACTGGACCTGGGAATGGCCTAAGGAGACAAGCATTGAGGGCTGAGCTCAGAAGCCAGGGAGAAGAGCTCAGAACCCCAGGAGAGGAGCTCAGAACCCTGGGAGAGGAGCTCAGAACCCTGGGAG
Seq C2 exon
GGCTTGGTAACCTTCGAGGATGTGGCCGTGGAGTTCACCCAGGAGGAGTGGGCGTTGCTGGACCCTGCCCAAAGGACACTGTACAGGGATGTGATGCTGGAGAACTGCAGGAACCTGGCCTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167785_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGTCTTCCCTGTTCCCAG
R:
CTAGTGAGGCCAGGTTCCTGC
Band lengths:
216-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)