HsaEX0073927 @ hg38
Exon Skipping
Gene
ENSG00000167785 | ZNF558
Description
zinc finger protein 558 [Source:HGNC Symbol;Acc:HGNC:26422]
Coordinates
chr19:8821180-8822091:-
Coord C1 exon
chr19:8822003-8822091
Coord A exon
chr19:8821442-8821635
Coord C2 exon
chr19:8821180-8821306
Length
194 bp
Sequences
Splice sites
3' ss Seq
GGGCCCATGATCCCCTGGAGATT
3' ss Score
-6.65
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CTCCGTCTTCCCTGTTCCCAGCCTCTCAGCAAAAAGGACACACACAGGGCGGAGAGCTGGTTAATGAGCTCCTGACAAGCTGGCTACGG
Seq A exon
ATTGAGGGAAATAAGATCACAGGAGCTCCCAGTCTGAGTGAGAAAAGGCAGCTGCTCTGTGGTACTGTGCACTGGACCTGGGAATGGCCTAAGGAGACAAGCATTGAGGGCTGAGCTCAGAAGCCAGGGAGAAGAGCTCAGAACCCCAGGAGAGGAGCTCAGAACCCTGGGAGAGGAGCTCAGAACCCTGGGAG
Seq C2 exon
GGCTTGGTAACCTTCGAGGATGTGGCCGTGGAGTTCACCCAGGAGGAGTGGGCGTTGCTGGACCCTGCCCAAAGGACACTGTACAGGGATGTGATGCTGGAGAACTGCAGGAACCTGGCCTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167785_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENST00000601372fB8177
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGTCTTCCCTGTTCCCAG
R:
CTAGTGAGGCCAGGTTCCTGC
Band lengths:
216-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development