HsaEX0073931 @ hg38
Exon Skipping
Gene
ENSG00000188321 | ZNF559
Description
zinc finger protein 559 [Source:HGNC Symbol;Acc:HGNC:28197]
Coordinates
chr19:9324695-9338582:+
Coord C1 exon
chr19:9324695-9324780
Coord A exon
chr19:9337796-9337858
Coord C2 exon
chr19:9338494-9338582
Length
63 bp
Sequences
Splice sites
3' ss Seq
AACAACTTCATCTTCTGCAGAGA
3' ss Score
7.26
5' ss Seq
ACGGTATGA
5' ss Score
8.54
Exon sequences
Seq C1 exon
GAACAGCATCTCTGCCTTCCTGTTCACGGTGACCTTCGCTTGGTGTCCTCCTGGCCTCAGCAACCTGACAATTCTGTCGTGTCCCG
Seq A exon
AGAGATGGCTAATGAATGGCGCTTGATGACAGATGAGTAATGCCTGTTGCTGAAAGATTGACG
Seq C2 exon
ATCATCTTTCTCAAGATGTTTTCTGTCTTCATGAGTCAAAATTTGAAGAGGAAAGGATGGTGGCTGGGTGGTTGACAAATTACTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188321-'3-7,'3-6,5-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCACGGTGACCTTCGCTTG
R:
AATTTGTCAACCACCCAGCCA
Band lengths:
146-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development