HsaEX0073960 @ hg38
Exon Skipping
Gene
ENSG00000198453 | ZNF568
Description
zinc finger protein 568 [Source:HGNC Symbol;Acc:HGNC:25392]
Coordinates
chr19:36925200-36936872:+
Coord C1 exon
chr19:36925200-36925258
Coord A exon
chr19:36931553-36931645
Coord C2 exon
chr19:36936746-36936872
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTATTTTTTATTTTTCGTAGAGA
3' ss Score
8.01
5' ss Seq
TAGGTGTGA
5' ss Score
2.17
Exon sequences
Seq C1 exon
CTTGGTGTTCTCAAGAGTCTGCCCTTTCCGAGGAAGAAGAGGATACAACCAGGCCTCTT
Seq A exon
AGATGGAGTCTCACTATGTTACCAAGGCTGTTCTCGAACTCCTGGCCTCAAGCAGTCCTCCTGCCTCAGCCTCCCAAAGTGCTACGATTATAG
Seq C2 exon
GAAACAGTGACATTTAAGGATGTGGCTGTTGACCTTACCCAGGAGGAGTGGGAGCAAATGAAACCTGCTCAAAGAAACTTGTATCGAGATGTGATGCTGGAGAACTACAGCAACCTAGTCACAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198453_MULTIEX1-5/8=3-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.761 A=0.000 C2=0.070
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTTCTCAAGAGTCTGCCC
R:
GGTTGCTGTAGTTCTCCAGCA
Band lengths:
171-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development