HsaEX0073959 @ hg38
Exon Skipping
Gene
ENSG00000198453 | ZNF568
Description
zinc finger protein 568 [Source:HGNC Symbol;Acc:HGNC:25392]
Coordinates
chr19:36917579-36936872:+
Coord C1 exon
chr19:36917579-36917648
Coord A exon
chr19:36925200-36925258
Coord C2 exon
chr19:36936746-36936872
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTCTCTTCCCTCAGCTT
3' ss Score
9
5' ss Seq
CTTGTACGT
5' ss Score
5.14
Exon sequences
Seq C1 exon
ATCTGTGTCTTGTAAAGAGCATATTGCTGGGCTTACATCCGTTTATCTTGTTTGACTGTTATTTTAATAG
Seq A exon
CTTGGTGTTCTCAAGAGTCTGCCCTTTCCGAGGAAGAAGAGGATACAACCAGGCCTCTT
Seq C2 exon
GAAACAGTGACATTTAAGGATGTGGCTGTTGACCTTACCCAGGAGGAGTGGGAGCAAATGAAACCTGCTCAAAGAAACTTGTATCGAGATGTGATGCTGGAGAACTACAGCAACCTAGTCACAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198453_MULTIEX1-3/8=C1-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.761 C2=0.070
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=100.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGGGCTTACATCCGTTT
R:
TCCAGCATCACATCTCGATACA
Band lengths:
148-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development