MmuEX0053462 @ mm10
Exon Skipping
Gene
ENSMUSG00000074221 | Zfp568
Description
zinc finger protein 568 [Source:MGI Symbol;Acc:MGI:2142347]
Coordinates
chr7:29985299-29997876:+
Coord C1 exon
chr7:29985299-29985326
Coord A exon
chr7:29989049-29989107
Coord C2 exon
chr7:29997750-29997876
Length
59 bp
Sequences
Splice sites
3' ss Seq
GATCTGTTCTCTTTCCTCAGCTT
3' ss Score
8.72
5' ss Seq
TCAGTACGT
5' ss Score
5.95
Exon sequences
Seq C1 exon
CTCATTTGTCTGGCCTGACTGTTAATAG
Seq A exon
CTTGGTGTGCCGAGGATTCTGTACCTCGCCAGGAAGAAGAAGACAGGACCAGGCCTTCA
Seq C2 exon
AAAACAGTGACATTCAAGGATGTGGCTGTGGACCTCACACAGGAGGAATGGCAGCAAATGAAGCCTGCTCAGAGGGCTTTGTACCGAGATGTGATGCTGGAGACCTACAGCAACCTAGTAACCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074221_MULTIEX1-2/5=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.850 C2=0.041
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTTGTCTGGCCTGACTGT
R:
TGCTGTAGGTCTCCAGCATCA
Band lengths:
139-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types