HsaEX0073959 @ hg19
Exon Skipping
Gene
ENSG00000198453 | ZNF568
Description
zinc finger protein 568 [Source:HGNC Symbol;Acc:25392]
Coordinates
chr19:37408481-37427774:+
Coord C1 exon
chr19:37408481-37408550
Coord A exon
chr19:37416102-37416160
Coord C2 exon
chr19:37427648-37427774
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTCTCTTCCCTCAGCTT
3' ss Score
9
5' ss Seq
CTTGTACGT
5' ss Score
5.14
Exon sequences
Seq C1 exon
ATCTGTGTCTTGTAAAGAGCATATTGCTGGGCTTACATCCGTTTATCTTGTTTGACTGTTATTTTAATAG
Seq A exon
CTTGGTGTTCTCAAGAGTCTGCCCTTTCCGAGGAAGAAGAGGATACAACCAGGCCTCTT
Seq C2 exon
GAAACAGTGACATTTAAGGATGTGGCTGTTGACCTTACCCAGGAGGAGTGGGAGCAAATGAAACCTGCTCAAAGAAACTTGTATCGAGATGTGATGCTGGAGAACTACAGCAACCTAGTCACAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198453_MULTIEX1-2/5=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.800 C2=0.080
Domain overlap (PFAM):
C1:
NA
A:
PF138721=AAA_34=FE(20.0=100),PF0301610=Exostosin=FE(12.0=100)
C2:
PF138721=AAA_34=FE(44.2=100),PF0135222=KRAB=WD(100=95.3),PF0301610=Exostosin=FE(26.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGGGCTTACATCCGTTT
R:
TCCAGCATCACATCTCGATACA
Band lengths:
148-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)