HsaEX0073958 @ hg19
Exon Skipping
Gene
ENSG00000198453 | ZNF568
Description
zinc finger protein 568 [Source:HGNC Symbol;Acc:25392]
Coordinates
chr19:37408481-37416160:+
Coord C1 exon
chr19:37408481-37408550
Coord A exon
chr19:37413488-37413748
Coord C2 exon
chr19:37416102-37416160
Length
261 bp
Sequences
Splice sites
3' ss Seq
ATTTATATCCTAATCCACAGGTC
3' ss Score
8.97
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATCTGTGTCTTGTAAAGAGCATATTGCTGGGCTTACATCCGTTTATCTTGTTTGACTGTTATTTTAATAG
Seq A exon
GTCCTGGTTCCACAAGGATAAAACACATCTGCAGTGCAAATAGAAGTCTGAGGAACAGGTGTCTTATCATGGAAGGAGACCTGACCTGAGACCTGCCTTAGAGGCTGGAGAGTCCTGAAAGAGAGTGGACCCTGGAGTTGCTGGAGCTTGTCTTGACCCTTCTGCCCAGAGCAGGCAGGGTCTGAATGACATCTCAATCTTCAGTGATCAGCAATAGCTGTGTGACAATGGAGCGTTTGAGCCACATGATGGAAAGGAAAG
Seq C2 exon
CTTGGTGTTCTCAAGAGTCTGCCCTTTCCGAGGAAGAAGAGGATACAACCAGGCCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198453_MULTIEX1-1/5=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.035 C2=0.800
Domain overlap (PFAM):
C1:
NA
A:
PF138721=AAA_34=PU(18.9=69.2),PF0301610=Exostosin=PU(11.4=69.2)
C2:
PF138721=AAA_34=FE(20.0=100),PF0301610=Exostosin=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)