HsaEX0073958 @ hg38
Exon Skipping
Gene
ENSG00000198453 | ZNF568
Description
zinc finger protein 568 [Source:HGNC Symbol;Acc:HGNC:25392]
Coordinates
chr19:36917579-36925258:+
Coord C1 exon
chr19:36917579-36917648
Coord A exon
chr19:36922586-36922846
Coord C2 exon
chr19:36925200-36925258
Length
261 bp
Sequences
Splice sites
3' ss Seq
ATTTATATCCTAATCCACAGGTC
3' ss Score
8.97
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATCTGTGTCTTGTAAAGAGCATATTGCTGGGCTTACATCCGTTTATCTTGTTTGACTGTTATTTTAATAG
Seq A exon
GTCCTGGTTCCACAAGGATAAAACACATCTGCAGTGCAAATAGAAGTCTGAGGAACAGGTGTCTTATCATGGAAGGAGACCTGACCTGAGACCTGCCTTAGAGGCTGGAGAGTCCTGAAAGAGAGTGGACCCTGGAGTTGCTGGAGCTTGTCTTGACCCTTCTGCCCAGAGCAGGCAGGGTCTGAATGACATCTCAATCTTCAGTGATCAGCAATAGCTGTGTGACAATGGAGCGTTTGAGCCACATGATGGAAAGGAAAG
Seq C2 exon
CTTGGTGTTCTCAAGAGTCTGCCCTTTCCGAGGAAGAAGAGGATACAACCAGGCCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198453_MULTIEX1-2/8=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.033 C2=0.761
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development