BtaEX0041409 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021742 | ZNF568
Description
zinc finger protein 568 [Source:HGNC Symbol;Acc:HGNC:25392]
Coordinates
chr18:47389303-47415655:-
Coord C1 exon
chr18:47410316-47415655
Coord A exon
chr18:47405724-47405996
Coord C2 exon
chr18:47389303-47389429
Length
273 bp
Sequences
Splice sites
3' ss Seq
TTTATATCATAAACCCACAGGTC
3' ss Score
8.32
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TCCCCACGGCCGAATTGATTCCTCTCAGCGCCCTGCCTGGACCCACCCGAAACGACTGCTCCTTCAATTCAGAGGTTAGCCAGGTCTCGGAGTTGCAATTCGAGGTATCTCAGCACGCTGGGGCTCAGCTACCCGATAGGACCTGGCTCACCCCCTCCTCACACAGGAAGCGCCTGCTCCTTTCTGGCCGGAAGTTGACTCCGGCCGCGGGACCTTCTGGGAGGTGTTGTGTTGTGGAACGTCCGTTGGGAGGCGGGCGCGGAGGGATGGTTCGGAGTTACCCGCACCTGACCTTCCCGAGTGTCGCCTGCACCCGGCGTCCCAGACACTGCGCGCTAGATGCGCACTCGGGTGTTTCCGGCAGGTGACGCTACCGCGTCCTCGGAGCGGGACTTTAAGGAGGCCGTGAAACATTCTTGGCTGAAGCAACGCGCGAGGCTGGCGGGCGGAGCCTTTAAGGAGGCCCCGAGTGGAATAGTGGCAGTGCGGAGTTGCTGCGG
Seq A exon
GTCCTGGCTCCACAAAGATAAGACAGATCTGTGATGTAAGGAGAAAGAAGCATGAAGAGCAGGTATCTGTTATGGAAGGAGACTTCCTGATCTGAGATCTTCCCCACCAGCTGGGGAGTCCTGAGATACAGTGGACCCTGGAATTTCTAGACCTGCACCCTATCTTAACCCCTCTGTATGGACTGTGGAAGGACTGAAGTACCTCTTAACCTTCAGAGATCAACAGTAGCAGTGTGACAATGAAGCGTTTGACTCGGATGATGGAAAGGACAG
Seq C2 exon
GAAACAGTGACATTTAAGGATGTGGCTGTGGACCTCACACAGGAGGAATGGCAGCAAATGAAACCTGCTCAGAGGAACTTGTACCGTGATGTGATGCTGGAGAACTACAGCAACCTAGTCACAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021742_MULTIEX2-4/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.012
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGATGGTTCGGAGTTACCC
R:
TTTGCTGCCATTCCTCCTGTG
Band lengths:
296-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development