BtaEX0041408 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021742 | ZNF568
Description
zinc finger protein 568 [Source:HGNC Symbol;Acc:HGNC:25392]
Coordinates
chr18:47389303-47415655:-
Coord C1 exon
chr18:47410316-47415655
Coord A exon
chr18:47406506-47406669
Coord C2 exon
chr18:47389303-47389429
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTTATCCCCTTTGTTTCTAGACT
3' ss Score
9.4
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
TCCCCACGGCCGAATTGATTCCTCTCAGCGCCCTGCCTGGACCCACCCGAAACGACTGCTCCTTCAATTCAGAGGTTAGCCAGGTCTCGGAGTTGCAATTCGAGGTATCTCAGCACGCTGGGGCTCAGCTACCCGATAGGACCTGGCTCACCCCCTCCTCACACAGGAAGCGCCTGCTCCTTTCTGGCCGGAAGTTGACTCCGGCCGCGGGACCTTCTGGGAGGTGTTGTGTTGTGGAACGTCCGTTGGGAGGCGGGCGCGGAGGGATGGTTCGGAGTTACCCGCACCTGACCTTCCCGAGTGTCGCCTGCACCCGGCGTCCCAGACACTGCGCGCTAGATGCGCACTCGGGTGTTTCCGGCAGGTGACGCTACCGCGTCCTCGGAGCGGGACTTTAAGGAGGCCGTGAAACATTCTTGGCTGAAGCAACGCGCGAGGCTGGCGGGCGGAGCCTTTAAGGAGGCCCCGAGTGGAATAGTGGCAGTGCGGAGTTGCTGCGG
Seq A exon
ACTCTTGGTGTTTCTATTGGTTCAACCTGAGTTGCTGAGTCTGAGTTGTCTTCCAAACTCCTGCTATCTCAGTATCTCTGGTCAGTGACTCCAGGAACTGTGAATTACAAGCAAGGAAGTCAGTTGTTTGGGACTATATTAATTATCTATTACTGTGTAATAAG
Seq C2 exon
GAAACAGTGACATTTAAGGATGTGGCTGTGGACCTCACACAGGAGGAATGGCAGCAAATGAAACCTGCTCAGAGGAACTTGTACCGTGATGTGATGCTGGAGAACTACAGCAACCTAGTCACAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021742_MULTIEX2-3/5=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.012
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGACCTTCCCGAGTGTC
R:
AGGTCCACAGCCACATCCTTA
Band lengths:
250-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development