BtaEX0041406 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021742 | ZNF568
Description
zinc finger protein 568 [Source:HGNC Symbol;Acc:HGNC:25392]
Coordinates
chr18:47409100-47415655:-
Coord C1 exon
chr18:47410316-47415655
Coord A exon
chr18:47409289-47409650
Coord C2 exon
chr18:47409100-47409168
Length
362 bp
Sequences
Splice sites
3' ss Seq
ATTTATTCTCTTATTCACAGGTT
3' ss Score
9.01
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
TCCCCACGGCCGAATTGATTCCTCTCAGCGCCCTGCCTGGACCCACCCGAAACGACTGCTCCTTCAATTCAGAGGTTAGCCAGGTCTCGGAGTTGCAATTCGAGGTATCTCAGCACGCTGGGGCTCAGCTACCCGATAGGACCTGGCTCACCCCCTCCTCACACAGGAAGCGCCTGCTCCTTTCTGGCCGGAAGTTGACTCCGGCCGCGGGACCTTCTGGGAGGTGTTGTGTTGTGGAACGTCCGTTGGGAGGCGGGCGCGGAGGGATGGTTCGGAGTTACCCGCACCTGACCTTCCCGAGTGTCGCCTGCACCCGGCGTCCCAGACACTGCGCGCTAGATGCGCACTCGGGTGTTTCCGGCAGGTGACGCTACCGCGTCCTCGGAGCGGGACTTTAAGGAGGCCGTGAAACATTCTTGGCTGAAGCAACGCGCGAGGCTGGCGGGCGGAGCCTTTAAGGAGGCCCCGAGTGGAATAGTGGCAGTGCGGAGTTGCTGCGG
Seq A exon
GTTTGCAGAATCTCTGTGTTCAGGTTATGTAGGCTGGGCTTGCCTGGGAGGCTGGGCTGCAGAATCCATTCAGACCGGCTCCACATGTGTTCTTTATGCAACTCAGGAAAAAAGGACAGTGGTTACCAGGACATGTTCTTCTCTTGGTGAATCACCAGAGTACAAGATAATCATAAAAACCTCTGCTCCCAAGTATACTAATGTTACAGATGCCTGAGCTTAACATTAATTACACCCACAGTCAGAGGGCAAGGCAAAATTAGATGGCAAAAAGTGTGAATGTCTAATCCTGTTAGAGGTGGGTGAAGAATTGGGACTAAGATTTCAATCTGCATCATTAGGAAACACGCCTCTTTATCCTG
Seq C2 exon
GTCTGTTTCTTATAAAGAGCATTTTGCTGGGCTTTTCCCCCTTTTATCCTGTTTGACTTATTTTAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021742_MULTIEX2-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTCTGGGAGGTGTTGTG
R:
ACAGGATAAAAGGGGGAAAAGCC
Band lengths:
342-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development