HsaEX1045244 @ hg38
Exon Skipping
Gene
ENSG00000198453 | ZNF568
Description
zinc finger protein 568 [Source:HGNC Symbol;Acc:HGNC:25392]
Coordinates
chr19:36917579-36922846:+
Coord C1 exon
chr19:36917579-36917648
Coord A exon
chr19:36921751-36921965
Coord C2 exon
chr19:36922586-36922846
Length
215 bp
Sequences
Splice sites
3' ss Seq
GAGTATAATTGTCATTTCAGATG
3' ss Score
5.68
5' ss Seq
TAGGTAAAC
5' ss Score
5.88
Exon sequences
Seq C1 exon
ATCTGTGTCTTGTAAAGAGCATATTGCTGGGCTTACATCCGTTTATCTTGTTTGACTGTTATTTTAATAG
Seq A exon
ATGAAGAATCTTGGAATTCTAAATTGCAATTCTCCCTTAATTCAGTTGCCAAGATAATACAGAAATGGAATGGAATAGCTGGTCTTTGAATGAAACTCTCTTTTATGCCAAATTTGGGGTTGCTGCAAATCTGGGTGTTTTTTGACTCAGGTTTACATCTGTCACCTCATCGAGCATACACCTTTAGACACAGAAGATATCTGAAGAACAGATAG
Seq C2 exon
GTCCTGGTTCCACAAGGATAAAACACATCTGCAGTGCAAATAGAAGTCTGAGGAACAGGTGTCTTATCATGGAAGGAGACCTGACCTGAGACCTGCCTTAGAGGCTGGAGAGTCCTGAAAGAGAGTGGACCCTGGAGTTGCTGGAGCTTGTCTTGACCCTTCTGCCCAGAGCAGGCAGGGTCTGAATGACATCTCAATCTTCAGTGATCAGCAATAGCTGTGTGACAATGGAGCGTTTGAGCCACATGATGGAAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198453_MULTIEX1-1/8=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.033
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGGGCTTACATCCGTTT
R:
ATGTGGCTCAAACGCTCCATT
Band lengths:
294-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains