MmuEX0053462 @ mm9
Exon Skipping
Gene
ENSMUSG00000074221 | Zfp568
Description
zinc finger protein 568 [Source:MGI Symbol;Acc:MGI:2142347]
Coordinates
chr7:30770279-30782895:+
Coord C1 exon
chr7:30770279-30770345
Coord A exon
chr7:30774068-30774126
Coord C2 exon
chr7:30782769-30782895
Length
59 bp
Sequences
Splice sites
3' ss Seq
GATCTGTTCTCTTTCCTCAGCTT
3' ss Score
8.72
5' ss Seq
TCAGTACGT
5' ss Score
5.95
Exon sequences
Seq C1 exon
GTTTCTCATGAGCAACATATCAGCTGAGTGTTTTTTAAACTCATTTGTCTGGCCTGACTGTTAATAG
Seq A exon
CTTGGTGTGCCGAGGATTCTGTACCTCGCCAGGAAGAAGAAGACAGGACCAGGCCTTCA
Seq C2 exon
AAAACAGTGACATTCAAGGATGTGGCTGTGGACCTCACACAGGAGGAATGGCAGCAAATGAAGCCTGCTCAGAGGGCTTTGTACCGAGATGTGATGCTGGAGACCTACAGCAACCTAGTAACCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074221_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.850 C2=0.052
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCATTTGTCTGGCCTGACTG
R:
TCTCCAGCATCACATCTCGGT
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: