HsaEX0073972 @ hg38
Exon Skipping
Gene
ENSG00000171827 | ZNF570
Description
zinc finger protein 570 [Source:HGNC Symbol;Acc:HGNC:26416]
Coordinates
chr19:37469080-37476007:+
Coord C1 exon
chr19:37469080-37469557
Coord A exon
chr19:37470304-37470387
Coord C2 exon
chr19:37475881-37476007
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTTCCCCATCTCAGTCA
3' ss Score
7.93
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTAGTGTGACGCTGGGCCCCGTCCCTGTGACCGGGCCAGGCTCGGAGCTGCAGGGAATCCGGACTTTCGGGCTCTCTGGAAGGCCGGGGAGAGGCCAGTGTGGGAGGACCTGGTGGGGAGGAGGCCGTGTTACAAACCCTGCGCGGAGCTGCACCGCTGCTGCCAGACACTGCGACGCCGCGACCTTTTCTACTCCGGACTACGTTTCCCAGCGGACCCCGCGGGAGTTGGGCCGGCGGCCCCTTTGTGTCCTCCGGGGGCGGAGGCAGCTGAGGCGCTTCTTTCCGGGCCCGTAAGGGCTGGGTTCCATCCAACTAAGGGTAGCGGTGAGACCCGAGTGCAGATTCCCCGAGCCTTCGGGGCAGGAAGGAGATCTTCCACCAGTTCTGTTCTGCAGGTCGGGAGTGGGCTGAGGAGTGGCGTGTGGGTCTCCGGAAGCTCGTCGCAGGCCATCTGTGTGACTCCGGTGCGAGTGGAG
Seq A exon
TCATCTGAGGCCACTGCTATTTCCCAAGAGAAGAGCCAGGAGGAAGAAAGAATGGCTGTTGGGCTTCTTAAAGCCATGTACCAG
Seq C2 exon
GAGTTGGTGACCTTCAGAGATGTGGCTGTAGACTTCTCCCAAGAGGAATGGGATTGTCTGGATTCTTCTCAAAGACATCTGTACAGTAATGTGATGCTAGAGAACTACAGGATCTTGGTATCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171827_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.135 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF139001=GVQW=PU(5.3=7.1)
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGACCCGAGTGCAGATTC
R:
GCCACATCTCTGAAGGTCACC
Band lengths:
178-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development