MmuEX7003738 @ mm10
Exon Skipping
Gene
ENSMUSG00000063623 | C230062I16Rik
Description
RIKEN cDNA C230062I16 gene [Source:MGI Symbol;Acc:MGI:2442417]
Coordinates
chr7:29956340-29961019:+
Coord C1 exon
chr7:29956340-29956586
Coord A exon
chr7:29956960-29957034
Coord C2 exon
chr7:29960893-29961019
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTGTTCTTTTCCCATCTCAGCTA
3' ss Score
8.33
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TAGATTCTCCAACTTGTGGCAGCTGGAGTGGAGAACATTCCAGAGCCTTCAGGGAAGAAGCGAGACAGGGAAGTGGCTGGGGAGTGTCCACCTGGAATCTGGTCGCCAGGCCTTCTGTGCGTCCCTGGAAGTAGGAAATGGTTGTTACAGTTCTGCGAGCCTGTCACCCAATGTGCGACTGAATCTATGCCTGGTACCTTCCCTTTCCCCCTTGTGCATCATCGGGGAGCCTCCTTGTGACTAGAAT
Seq A exon
CTAGCCCAGATCGCCATTTCTTAGGAGGAGCTGAGAGGAAGAGTGGCTGTCGGACTTCTTAAAGCCGTGCACCAG
Seq C2 exon
GAGCTGGTGACCTTCAGAGATGTGGCAGTAGACTTCCCCCAAGAGGAATGGGGTTGCCTGAATTCTTCTCAAAGGCATTTGTACAGTTGTGTGATGTTGGAGAACTATAGAATCCTGGTGTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063623-'1-4,'1-3,6-4=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGTGCGTCCCTGGAAGTA
R:
TCTTGGGGGAAGTCTACTGCC
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types