HsaEX0073991 @ hg19
Exon Skipping
Gene
ENSG00000198440 | ZNF583
Description
zinc finger protein 583 [Source:HGNC Symbol;Acc:26427]
Coordinates
chr19:56925714-56934416:+
Coord C1 exon
chr19:56925714-56925809
Coord A exon
chr19:56932800-56932894
Coord C2 exon
chr19:56934260-56934416
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTCATGTTGACTTTTTATAGGGC
3' ss Score
7.26
5' ss Seq
TAAGTATGT
5' ss Score
4.58
Exon sequences
Seq C1 exon
GAGTTTCTGTTTCTAAGCCAGATGTGATCTCATTATTGGAGCAAGGAAAAGAGCCCTGGATGGTGAAGAAGGAGGGAACAAGAGGCCCATGCCCTG
Seq A exon
GGCATTCATGGGTGTGATTTGCAACTGTTTAGAGAGGAAAGTGGAATTTGGAAGGGCACTGAGGCAGCACAGCGGAATTAGCAGCCTCAATTTAA
Seq C2 exon
ATTGGGAGTATGTATTTAAAAACAGTGAATTTTCATCAAAGCAAGAGACATATGAAGAATCATCCAAAGTTGTGACAGTGGGAGCAAGACATCTTAGTTATAGCCTTGACTATCCCAGTTTGAGAGAAGACTGTCAAAGTGAGGACTGGTATAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198440-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.600 C2=0.116
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGAGGGAACAAGAGGCC
R:
ACCAGTCCTCACTTTGACAGTC
Band lengths:
180-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)