HsaEX0073999 @ hg19
Exon Skipping
Gene
ENSG00000196967 | ZNF585A
Description
zinc finger protein 585A [Source:HGNC Symbol;Acc:26305]
Coordinates
chr19:37638513-37647257:-
Coord C1 exon
chr19:37647131-37647257
Coord A exon
chr19:37646767-37646859
Coord C2 exon
chr19:37638513-37644508
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTATCATTTCCCATGAACAGGAT
3' ss Score
8.73
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGATCAGTGTCCTTCAGGGATGTGGCTATCGATTTCAGCAGAGAGGAATGGCGGCACCTGGACCCTTCTCAGAGAAACCTGTACCGGGATGTGATGCTGGAGACCTACAGCCACCTGCTCTCAGTAG
Seq A exon
GATATCAAGTTCCTGAAGCAGAGGTGGTCATGTTGGAGCAAGGAAAGGAACCATGGGCACTGCAGGGTGAGAGGCCACGTCAGAGCTGCCCAG
Seq C2 exon
GAGAGAAATTATGGGACCATAATCAATGTAGAAAAATCCTCAGTTATAAACAAGTATCCTCTCAACCTCAAAAAATGTATCCTGGGGAGAAAGCTTATGAATGCGCCAAATTTGAAAAGATATTCACCCAGAAGTCACAGCTCAAAGTACACCTGAAAGTTCTTGCAGGAGAAAAGCTCTATGTATGCATTGAATGTGGGAAGGCTTTTGTACAGAAGCCAGAATTTATTATACACCAGAAAACCCATATGAGAGAGAAACCCTTTAAATGCAATGAATGTGGAAAATCCTTTTTTCAAGTGTCGTCCCTCTTCAGGCATCAGAGAATTCATACCGGAGAGAAACTCTATGAATGCAGCCAGTGTGGGAAAGGCTTCTCTTATAACTCAGATCTCAGTATACATGAGAAAATTCATACTGGAGAGAGACACCATGAATGCACTGACTGTGGCAAAGCATTCACACAAAAGTCCACACTCAAGATGCATCAGAAAATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196967-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.179 C2=0.028
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(95.1=90.7)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF097235=Zn-ribbon_8=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF0214814=zf-UBP=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGACCTACAGCCACCTG
R:
TGAGCTGTGACTTCTGGGTGA
Band lengths:
175-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)