BtaEX0041404 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021742 | ZNF568
Description
zinc finger protein 568 [Source:HGNC Symbol;Acc:HGNC:25392]
Coordinates
chr18:47384124-47389429:-
Coord C1 exon
chr18:47389303-47389429
Coord A exon
chr18:47388944-47389039
Coord C2 exon
chr18:47384124-47385706
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGTCTCTCAAAATAGGTT
3' ss Score
9.81
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GAAACAGTGACATTTAAGGATGTGGCTGTGGACCTCACACAGGAGGAATGGCAGCAAATGAAACCTGCTCAGAGGAACTTGTACCGTGATGTGATGCTGGAGAACTACAGCAACCTAGTCACAGTGG
Seq A exon
GTTGTCAAGTCACCAAACCAGATGTGATCTTCAAGTTGGAGCACGAAGAGGAGCCATGGGTGGTAGAAGAAGAAATGCTTGGGCGGCACTGTCCAG
Seq C2 exon
AAGTTTGGAAAGTTGATGAACAGATCAAGAAGCAACAGGAAACCCTTGTGAGGAATGTCACATCCATCTCCAAGAAAACTCTGATTAAGGAAAATGCCGTTGAATATAAAAATGTTGCAAAAGTATTTCCTCTGGACTCAGACATTGTTACTTCAAGACAAAAGTTTTTCGAATGTGACTCACTTGATAAGGATTTTGAACATAGTTTAGACTTATTTAGTTATGAGAAAGGCTTTATAAAAAAGAAAAGTTATGAATGTAATAAGTATGGGAAACCATTTTACCATTGCTCATCCCATGTCATAACCCCCTTTAAGTGTAATCAGTGTGGACAGGATTTTAGTCATAGATTTGACCTCATCAGACATGAGAGAAGTCATGCTGGAGAGAAACCCTATGAATGTAAGGAATGTGGAAAAGCTTTCAGTAGGAAGGAAAATCTTATTACACATCAAAAAATTCATACTGGGGAAAAACCATATAAGTGTAATGAATGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021742-'8-15,'8-12,9-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.121 C2=0.049
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF127602=Zn_Tnp_IS1595=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGATGTGGCTGTGGACCT
R:
TCCTCACAAGGGTTTCCTGTTG
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development