MmuEX6009691 @ mm9
Exon Skipping
Gene
ENSMUSG00000074221 | Zfp568
Description
zinc finger protein 568 [Source:MGI Symbol;Acc:MGI:2142347]
Coordinates
chr7:30782769-30798908:+
Coord C1 exon
chr7:30782769-30782895
Coord A exon
chr7:30783134-30783229
Coord C2 exon
chr7:30798859-30798908
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTCCTGTTTCCTGAAACAGGTT
3' ss Score
9.95
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
AAAACAGTGACATTCAAGGATGTGGCTGTGGACCTCACACAGGAGGAATGGCAGCAAATGAAGCCTGCTCAGAGGGCTTTGTACCGAGATGTGATGCTGGAGACCTACAGCAACCTAGTAACCGTGG
Seq A exon
GTTGTCAAGTCACCAAACCAGATGTGATCTTCAAGTTGGAACAAGCAGAGGAGCCATGGGTACTGGAGGAAGAGATGTTTTGGAGACGCTCTCCAG
Seq C2 exon
AAGCCGCAAGAGGAAGAATGAAGAGTTTTGCCTTTAAGGACATGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074221-'12-11,'12-7,13-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCAAGGATGTGGCTGTGG
R:
TTGGCCATGTCCTTAAAGGCA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: